BS24586.complete Sequence
649 bp assembled on 2011-06-17
GenBank Submission: KX802936
> BS24586.complete
GAAGTTATCAGTCGACATGAAATCCTTTAGCGGAGGTCTGTTCTTTGCCC
TTCTGGTGGGAGCCAGTTGGGCAGCTCCCCATGGTGGACACGCCACCAGC
TACAGTTCGGTGACCAAGCACGAAGGACCCGTCCACAAGAGCCTGGGCTA
CGGATACGATCACGATGTGGTCAGCGCTTACGGTGGCATCTACGGACACG
GCTATCCGAGTGTCGGCCATTCGGGCTACGGATACGGATACGACAAGCAC
GAGCCCCATCACTATCCCAAGTACCAATTCGACTACGGCGTCAAGGATGC
CCACACCGGAGACCAGAAGAGCCAGTGGGAGACGCGGGATGGCGACAAGG
TCAAGGGCAGCTACTCCCTCAAGGAATCGGATGGCACCACCCGAGTGGTG
GAGTACACCGCCGATGACCACAATGGCTTCAACGCAGTGGTAAAGAAGCT
CGGCCACGCCCACCACCCCCAGGTCTACCACAAGGGCTACGGACACGGCG
ATATCTACGACGCCGACTACGGCTACGGTCACGATGTGGCGCAATATGGC
GGATACGGATACGGACACGGAGGCCACGCCAGTAGCTACGTAAGCGTGAA
GCAGCTGCACTAAAAGCTTTCTAGACCATTCGTTTGGCGCGCAAAACGG
BS24586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bb-RA | 597 | CG9290-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
| Cpr76Ba-RA | 615 | CG9283-PA | 286..456 | 260..430 | 225 | 75.4 | Plus |
| Cpr62Bc-RB | 543 | CG1919-PB | 286..323 | 398..435 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bb-RA | 771 | CG9290-RA | 43..643 | 13..613 | 2990 | 99.8 | Plus |
| Cpr76Ba-RA | 781 | CG9283-RA | 343..513 | 260..430 | 225 | 75.4 | Plus |
| Cpr62Bc-RB | 1017 | CG1919-RB | 366..403 | 398..435 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19519691..19520291 | 13..613 | 2990 | 99.8 | Plus |
| 3L | 28110227 | 3L | 19517820..19517990 | 430..260 | 225 | 75.4 | Minus |
| 3L | 28110227 | 3L | 1841012..1841049 | 435..398 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:57 has no hits.
BS24586.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:08 Download gff for
BS24586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bb-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:43 Download gff for
BS24586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bb-RA | 47..645 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:29 Download gff for
BS24586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr76Bb-RA | 47..645 | 17..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:29 Download gff for
BS24586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19519695..19520293 | 17..617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:43 Download gff for
BS24586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19512795..19513393 | 17..617 | 99 | | Plus |
BS24586.pep Sequence
Translation from 16 to 612
> BS24586.pep
MKSFSGGLFFALLVGASWAAPHGGHATSYSSVTKHEGPVHKSLGYGYDHD
VVSAYGGIYGHGYPSVGHSGYGYGYDKHEPHHYPKYQFDYGVKDAHTGDQ
KSQWETRDGDKVKGSYSLKESDGTTRVVEYTADDHNGFNAVVKKLGHAHH
PQVYHKGYGHGDIYDADYGYGHDVAQYGGYGYGHGGHASSYVSVKQLH*
BS24586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr76Bb-PA | 198 | CG9290-PA | 1..198 | 1..198 | 1124 | 100 | Plus |
| Cpr76Ba-PA | 204 | CG9283-PA | 15..190 | 14..196 | 391 | 43.9 | Plus |
| Cpr62Bc-PB | 180 | CG1919-PB | 19..119 | 56..155 | 286 | 55.7 | Plus |
| Cpr62Bc-PA | 180 | CG1919-PA | 19..119 | 56..155 | 286 | 55.7 | Plus |
| Cpr66Cb-PA | 162 | CG7076-PA | 11..159 | 11..156 | 279 | 43.4 | Plus |
