BS24587.complete Sequence
529 bp assembled on 2011-06-17
GenBank Submission: KX802645
> BS24587.complete
GAAGTTATCAGTCGACATGGATGCTCCCACCATCAAGCTTGAGTCCTCGG
ATGGGATGATCTTTTCAACGGAAGTCCGAGCCGCCAAGCTCTCCGAAACC
ATCAAGACCATGTTGGAGGTCTCTGCCGTGGAGAACGACGAGAATGCCAT
TGTGCCGCTGCCCAAGGTGAACGCGTTCATCCTATCCAAGATTCTGACCT
GGATCTATCACCACAAGGACGATGATGCCCATGGAGCGGAGGGCGTGGAG
TTGAGCCCGCAAAGCCCACATGACATCTCAGCCTGGGACGCCAACTTTAT
TAACGTCGATCAACCCACCTTGTTCGAAATCATACTGGCCGCCAACTATC
TGGAGATCAAGGGCCTAGTGGATCTCTGTTGCAAGACGGTGGCCAATATG
ATTAGGGGAAAGACTCCCGAGGAGATCCGCCACACGTTCAACATCCCGGA
CGAAATACCGAGCAGGACGGCCCAGTTGGGCGAAGACCTGTGAAAGCTTT
CTAGACCATTCGTTTGGCGCGCAAAAGGG
BS24587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpC-RA | 477 | CG11941-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
| SkpD-RA | 477 | CG12700-PA | 1..477 | 17..493 | 1905 | 93.3 | Plus |
| SkpE-RA | 504 | CG11942-PA | 1..434 | 17..450 | 970 | 81.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpC-RA | 629 | CG11941-RA | 67..543 | 17..493 | 2385 | 100 | Plus |
| SkpD-RA | 656 | CG12700-RA | 73..549 | 17..493 | 1905 | 93.3 | Plus |
| SkpE-RA | 713 | CG11942-RA | 82..515 | 17..450 | 970 | 81.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19816138..19816614 | 17..493 | 2385 | 100 | Plus |
| X | 23542271 | X | 19812801..19813277 | 17..493 | 1905 | 93.3 | Plus |
| X | 23542271 | X | 19823566..19823999 | 450..17 | 970 | 81.6 | Minus |
| X | 23542271 | X | 657416..657528 | 332..444 | 250 | 81.4 | Plus |
| X | 23542271 | X | 657113..657258 | 26..171 | 235 | 77.4 | Plus |
| 2R | 25286936 | 2R | 12139507..12139683 | 446..270 | 210 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:42:07 has no hits.
BS24587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:08 Download gff for
BS24587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpC-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:47 Download gff for
BS24587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpC-RA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:33 Download gff for
BS24587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpC-RA | 67..546 | 17..497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:33 Download gff for
BS24587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19816138..19816617 | 17..497 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:47 Download gff for
BS24587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19710171..19710650 | 17..497 | 99 | | Plus |
BS24587.pep Sequence
Translation from 16 to 492
> BS24587.pep
MDAPTIKLESSDGMIFSTEVRAAKLSETIKTMLEVSAVENDENAIVPLPK
VNAFILSKILTWIYHHKDDDAHGAEGVELSPQSPHDISAWDANFINVDQP
TLFEIILAANYLEIKGLVDLCCKTVANMIRGKTPEEIRHTFNIPDEIPSR
TAQLGEDL*
BS24587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpC-PA | 158 | CG11941-PA | 1..158 | 1..158 | 815 | 100 | Plus |
| SkpD-PA | 158 | CG12700-PA | 1..158 | 1..158 | 705 | 85.4 | Plus |
| SkpE-PA | 167 | CG11942-PA | 1..155 | 1..154 | 469 | 62.6 | Plus |
| SkpA-PI | 162 | CG16983-PI | 2..155 | 4..157 | 445 | 59.4 | Plus |
| SkpA-PH | 162 | CG16983-PH | 2..155 | 4..157 | 445 | 59.4 | Plus |
