Clone BS24594 Report

Search the DGRC for BS24594

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptETH-RA
Protein status:BS24594.pep: full length peptide match
Sequenced Size:644

Clone Sequence Records

BS24594.complete Sequence

644 bp assembled on 2011-06-17

GenBank Submission: KX804991

> BS24594.complete
GAAGTTATCAGTCGACATGAGAATCATAACAGTCCTGTCTGTTTCGCTCT
TGGTGGGTCTTGTGGCCATAAGCCAGGCAGACGACAGTAGTCCAGGATTC
TTCCTAAAGATCACCAAGAACGTACCGCGGCTGGGCAAGCGAGGCGAGAA
CTTTGCCATAAAGAACCTAAAGACCATTCCTCGCATAGGACGCAGTGAGC
ACAGCTCTGTTACTCCTCTGCTGGCGTGGCTATGGGATTTGGAAACGAGT
CCAAGCAAGCGGCGCTTACCCGCAGGGGAATCCCCAGCGAAGGAGCAGGA
ACTTAACGTGGTGCAGCCCGTCAACTCGAATACGCTCCTTGAGCTGCTTG
ACAACAACGCTATTCCCAGCGAGCAGGTGAAGTTCGTCCACTGGAAGGAT
TTCGATCGTGCCCTCCAGGCAGATGCCGATCTGTACAGCAAGGTTATCCA
GCTGGGACGCCGTCCGGACCAGCACCTCAAGCAGACTCTCAGCTTTGGCA
GCTTCGTTCCCATCTTCGGCGACGAGCAGAATCCGGACTTTATGATGTAC
AAAAACAACGAGGATCAGGAACTTTACGGCGGGGGAAATCGCTACGATCG
CCAATTCCTCAAGTACAACATCCTGTGAAAGCTTTCTAGACCAT

BS24594.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
ETH-RA 612 CG18105-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
ETH-RA 755 CG18105-RA 24..636 16..628 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24794789..24795214 628..203 2130 100 Minus
2R 25286936 2R 24795273..24795459 202..16 935 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:41:46 has no hits.

BS24594.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:07 Download gff for BS24594.complete
Subject Subject Range Query Range Percent Splice Strand
ETH-RA 1..611 17..627 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:40 Download gff for BS24594.complete
Subject Subject Range Query Range Percent Splice Strand
ETH-RA 25..635 17..627 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:25 Download gff for BS24594.complete
Subject Subject Range Query Range Percent Splice Strand
ETH-RA 25..635 17..627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:25 Download gff for BS24594.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24794790..24795214 203..627 100 <- Minus
2R 24795273..24795458 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:40 Download gff for BS24594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20682313..20682737 203..627 100 <- Minus
arm_2R 20682796..20682981 17..202 100   Minus

BS24594.pep Sequence

Translation from 16 to 627

> BS24594.pep
MRIITVLSVSLLVGLVAISQADDSSPGFFLKITKNVPRLGKRGENFAIKN
LKTIPRIGRSEHSSVTPLLAWLWDLETSPSKRRLPAGESPAKEQELNVVQ
PVNSNTLLELLDNNAIPSEQVKFVHWKDFDRALQADADLYSKVIQLGRRP
DQHLKQTLSFGSFVPIFGDEQNPDFMMYKNNEDQELYGGGNRYDRQFLKY
NIL*

BS24594.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
ETH-PA 203 CG18105-PA 1..203 1..203 1049 100 Plus