Clone BS24692 Report

Search the DGRC for BS24692

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:246
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptSfp35C-RA
Protein status:BS24692.pep: full length peptide match
Sequenced Size:278

Clone Sequence Records

BS24692.complete Sequence

278 bp assembled on 2011-06-17

GenBank Submission: KX800199

> BS24692.complete
GAAGTTATCAGTCGACATGAAATTGTTTTTCTTAGTTATTCTGGCCTGTA
TGCTAATCGGAATTGCATGGGGAGAAAACTGCAATAAGCCGTGCGGAAAA
TGCATCTTGCCCACCTGCAATTATGATGGCAAATGTTACTTTGAGGGAAC
TAGCGCTTGTGCTCTGGAAAATGAAAAGTGCCGACGAAAGAAGAATAATC
TTGACCAATTCGTAAAAACCGTGTCTGGGTTCTGTGAGATGGGCGTTAAA
ATGTGTAAATAGAAGCTTTCTAGACCAT

BS24692.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp35C-RB 246 CG42475-PB 1..246 17..262 1230 100 Plus
Sfp35C-RA 246 CG42475-PA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp35C-RB 280 CG42475-RB 29..274 17..262 1230 100 Plus
Sfp35C-RA 368 CG42475-RA 29..274 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15201822..15201984 206..44 815 100 Minus
2L 23513712 2L 15201707..15201762 262..207 280 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:42:32 has no hits.

BS24692.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:10 Download gff for BS24692.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp35C-RA 29..268 17..256 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:56 Download gff for BS24692.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp35C-RA 29..268 17..256 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:44 Download gff for BS24692.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp35C-RA 29..268 17..256 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:44 Download gff for BS24692.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15201713..15201762 207..256 100 <- Minus
2L 15201822..15201983 45..206 100 <- Minus
2L 15202037..15202064 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:56 Download gff for BS24692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15201713..15201762 207..256 100 <- Minus
arm_2L 15201822..15201983 45..206 100 <- Minus
arm_2L 15202037..15202064 17..44 100   Minus

BS24692.pep Sequence

Translation from 16 to 261

> BS24692.pep
MKLFFLVILACMLIGIAWGENCNKPCGKCILPTCNYDGKCYFEGTSACAL
ENEKCRRKKNNLDQFVKTVSGFCEMGVKMCK*

BS24692.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp35C-PB 81 CG42475-PB 1..81 1..81 458 100 Plus
Sfp35C-PA 81 CG42475-PA 1..81 1..81 458 100 Plus