Clone BS24710 Report

Search the DGRC for BS24710

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:247
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG12506-RA
Protein status:BS24710.pep: full length peptide match
Sequenced Size:383

Clone Sequence Records

BS24710.complete Sequence

383 bp assembled on 2011-06-17

GenBank Submission: KX803759

> BS24710.complete
GAAGTTATCAGTCGACATGCGTTCCTTCATTCTGATTGCCCTCTTCGCCC
TGATTGCCCTGGCTGCTGCTCAAGGCGGACCACAAGGTGGACAGCAGGGT
GGGCAAGGAGGATCTCAAAATGGTCAGCAAGGAGGCCAGCAGGGAGGCTC
CCAGGAAGGATCCCAGGAAGGATCCCAGGAAGGACAACAGGGAGGTCAGC
AGGGAGGTCAGCAGCAGGGTGGTCCTGGCGGTCCATGGGGTCTGCCTCCG
AATGGAACTGAACTCTCCAACAGTACCACAACTTCGACCACTGAGGCTAC
CAGCACTGAATCCAGCAGCACAGAGGTATCGTCTTCGTAAAAGCTTTCTA
GACCATTCGTTAGGCGCGCGAAAGGGGGGAAGA

BS24710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12506-RA 324 CG12506-PA 1..324 17..340 1590 99.4 Plus
CG13946-RA 300 CG13946-PA 1..281 17..321 915 88.2 Plus
CG13947-RA 360 CG13947-PA 1..86 17..102 235 84.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12506-RA 471 CG12506-RA 49..372 17..340 1590 99.4 Plus
CG13946-RA 406 CG13946-RA 7..287 17..321 915 88.2 Plus
CG13947-RA 483 CG13947-RA 32..117 17..102 235 84.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 773595..773918 17..340 1590 99.4 Plus
2L 23513712 2L 776542..776822 17..321 915 88.2 Plus
2L 23513712 2L 779204..779289 17..102 235 84.9 Plus
Blast to na_te.dros performed on 2014-11-26 14:42:37 has no hits.

BS24710.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:11 Download gff for BS24710.complete
Subject Subject Range Query Range Percent Splice Strand
CG12506-RA 21..347 17..346 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:57 Download gff for BS24710.complete
Subject Subject Range Query Range Percent Splice Strand
CG12506-RA 49..375 17..346 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:46 Download gff for BS24710.complete
Subject Subject Range Query Range Percent Splice Strand
CG12506-RA 49..375 17..346 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:46 Download gff for BS24710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 773595..773921 17..346 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:57 Download gff for BS24710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 773595..773921 17..346 98   Plus

BS24710.pep Sequence

Translation from 16 to 339

> BS24710.pep
MRSFILIALFALIALAAAQGGPQGGQQGGQGGSQNGQQGGQQGGSQEGSQ
EGSQEGQQGGQQGGQQQGGPGGPWGLPPNGTELSNSTTTSTTEATSTESS
STEVSSS*

BS24710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12506-PA 107 CG12506-PA 1..107 1..107 550 100 Plus
CG13946-PA 99 CG13946-PA 1..99 1..107 465 86 Plus
CG13947-PA 119 CG13947-PA 1..113 1..107 361 67.3 Plus
lcs-PA 145 CG12794-PA 1..128 1..107 171 38 Plus
CG10918-PA 183 CG10918-PA 1..143 1..107 140 33.1 Plus