BS24716.complete Sequence
578 bp assembled on 2011-06-17
GenBank Submission: KX803720
> BS24716.complete
GAAGTTATCAGTCGACATGTGGAAGTATCTCGGATTCTTTGCCCTTTTGG
CCGGAGCGAGTTCTCTGGGTCAGCAGGCTGGTTTGGAAGCCTCGACCTGT
GGAGGAAGTACAGGGTGCTTAAGGAGCCTGCCATCGAGATCATCAGCTGT
CGAGCCCTCGGATGCGTATCTGAACCGTAGGAGGAGGCAACAGCAAATCG
TACAGGAGGTAATCGTGGAGAACAACTTTGGTGGTCCCGGGTTTGGTGGA
CCTGGTTTTGGAGGACCTGGTTTTGGAGGTCCTGGCTTCGGAGGTCCGGG
CTTCGGAGGCCCTGGCTTTGGACGTCCCGGCTTTGGAGGTCCCGGTTTCG
GAGGTCCCGGCTTCGGAGGTCCTGGTTTTGGACGTGGCAAATTTGGCTTC
GCTCGCAGCTACGACCAGGATGAGGCCCAGGTACCGGTTCAGGGAACATA
CCAACAACAAACCACACTCAGTGAAGTTCCTTCTCCAGCTTGCCCAAAGA
ACTATGTGTTCTCCTGCGAAGCGGTTATCAAGCCGGTTCCATGTGGGTAC
AGCTCATATTGAAAGCTTTCTAGACCAT
BS24716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm26Ac-RA | 546 | CG13997-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
| Vm26Ac-RA | 546 | CG13997-PA | 210..309 | 286..385 | 245 | 83 | Plus |
| Vm26Ac-RA | 546 | CG13997-PA | 270..369 | 226..325 | 245 | 83 | Plus |
| CG3588-RI | 1989 | CG3588-PI | 1032..1093 | 229..290 | 205 | 88.7 | Plus |
| CG3588-RI | 1989 | CG3588-PI | 1032..1093 | 244..305 | 205 | 88.7 | Plus |
| CG3588-RH | 1980 | CG3588-PH | 1023..1084 | 229..290 | 205 | 88.7 | Plus |
| CG3588-RI | 1989 | CG3588-PI | 1032..1091 | 259..318 | 195 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm26Ac-RA | 627 | CG13997-RA | 40..586 | 16..562 | 2735 | 100 | Plus |
| Vm26Ac-RA | 627 | CG13997-RA | 250..349 | 286..385 | 245 | 83 | Plus |
| Vm26Ac-RA | 627 | CG13997-RA | 310..409 | 226..325 | 245 | 83 | Plus |
| CG3588-RI | 3244 | CG3588-RI | 1241..1302 | 244..305 | 205 | 88.7 | Plus |
| CG3588-RI | 3244 | CG3588-RI | 1241..1302 | 229..290 | 205 | 88.7 | Plus |
| CG3588-RH | 2471 | CG3588-RH | 1426..1487 | 229..290 | 205 | 88.7 | Plus |
| CG3588-RI | 3244 | CG3588-RI | 1241..1300 | 259..318 | 195 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5958046..5958592 | 562..16 | 2735 | 100 | Minus |
| 2L | 23513712 | 2L | 5958223..5958322 | 325..226 | 245 | 83 | Minus |
| 2L | 23513712 | 2L | 5958283..5958382 | 385..286 | 245 | 83 | Minus |
| X | 23542271 | X | 2922423..2922484 | 229..290 | 205 | 88.7 | Plus |
| X | 23542271 | X | 2922423..2922484 | 244..305 | 205 | 88.7 | Plus |
| X | 23542271 | X | 2922423..2922482 | 259..318 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:36 has no hits.
BS24716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:15 Download gff for
BS24716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Ac-RA | 41..585 | 17..561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:18 Download gff for
BS24716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Ac-RA | 41..585 | 17..561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:03 Download gff for
BS24716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm26Ac-RA | 41..585 | 17..561 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:03 Download gff for
BS24716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5958047..5958591 | 17..561 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:18 Download gff for
BS24716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5958047..5958591 | 17..561 | 100 | | Minus |
BS24716.pep Sequence
Translation from 16 to 561
> BS24716.pep
MWKYLGFFALLAGASSLGQQAGLEASTCGGSTGCLRSLPSRSSAVEPSDA
YLNRRRRQQQIVQEVIVENNFGGPGFGGPGFGGPGFGGPGFGGPGFGGPG
FGRPGFGGPGFGGPGFGGPGFGRGKFGFARSYDQDEAQVPVQGTYQQQTT
LSEVPSPACPKNYVFSCEAVIKPVPCGYSSY*
BS24716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm26Ac-PA | 181 | CG13997-PA | 1..181 | 1..181 | 997 | 100 | Plus |
| CG7296-PB | 161 | CG7296-PB | 46..118 | 72..130 | 204 | 71.2 | Plus |
| CG7296-PA | 161 | CG7296-PA | 46..118 | 72..130 | 204 | 71.2 | Plus |
| CG3588-PF | 631 | CG3588-PF | 223..333 | 12..116 | 192 | 43.6 | Plus |
| CG3588-PH | 659 | CG3588-PH | 251..361 | 12..116 | 192 | 43.6 | Plus |
| CG7296-PB | 161 | CG7296-PB | 33..101 | 69..124 | 175 | 70 | Plus |
| CG7296-PA | 161 | CG7296-PA | 33..101 | 69..124 | 175 | 70 | Plus |
| CG7296-PB | 161 | CG7296-PB | 36..84 | 77..125 | 146 | 72.2 | Plus |
| CG7296-PA | 161 | CG7296-PA | 36..84 | 77..125 | 146 | 72.2 | Plus |
