Clone BS24717 Report

Search the DGRC for BS24717

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:247
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCp18-RA
Protein status:BS24717.pep: full length peptide match
Sequenced Size:551

Clone Sequence Records

BS24717.complete Sequence

551 bp assembled on 2011-06-17

GenBank Submission: KX802478

> BS24717.complete
GAAGTTATCAGTCGACATGATGAAGTTCATGTGCATCTGCCTCTGCGCCA
TCTCTGCCGTTTCGGCCAACTCCTACGGACGTTCCCGTGGTGGATACGGT
GGTGCCCCAGTCGGTGGCTATGCCTACCAGGTGCAGCCTGCCCTGACCGT
TAAGGCGATCGTTCCCTCATACGGTGGTGGATACGGCGGAAACCATGGAG
GATATGGCGGTGCCTACGAGTCGGTGCCTGTGCCCGTGTCCTCTGCCTAC
AGCGGTGCCAATGTGGGATCTCAGTACTCCGGTTCCGGCTACGGCGGTGC
CCCACCAGTTGATGCCCAGGCCATTGCCCTCGCCAAGCTCGCCCTGGCCG
CTCCCAGCGCTGGAGCTCCTCTGGTCTGGAAGGAGGCTCCCCGCTACGCC
CAGCCCGTCTATCCCCCCACCAGCTACGTGAACCAGGAGTACGGACACAG
CGAGAAGGTGAAGGGAGGCTCCGCAGCCGCTGCTGCCAGCTCCGTGGCCG
CCGGAAAGAAGGGCTACAAGAGGCCCAGCTACTAAAAGCTTTCTAGACCA
T

BS24717.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cp18-RA 519 CG6517-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cp18-RA 649 CG6517-RA 45..563 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8727023..8727527 31..535 2525 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:43:42 has no hits.

BS24717.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:16 Download gff for BS24717.complete
Subject Subject Range Query Range Percent Splice Strand
Cp18-RA 45..561 17..533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:19 Download gff for BS24717.complete
Subject Subject Range Query Range Percent Splice Strand
Cp18-RA 45..561 17..533 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:05 Download gff for BS24717.complete
Subject Subject Range Query Range Percent Splice Strand
Cp18-RA 45..561 17..533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:05 Download gff for BS24717.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8727024..8727525 32..533 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:19 Download gff for BS24717.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8720124..8720625 32..533 100   Plus

BS24717.pep Sequence

Translation from 16 to 534

> BS24717.pep
MMKFMCICLCAISAVSANSYGRSRGGYGGAPVGGYAYQVQPALTVKAIVP
SYGGGYGGNHGGYGGAYESVPVPVSSAYSGANVGSQYSGSGYGGAPPVDA
QAIALAKLALAAPSAGAPLVWKEAPRYAQPVYPPTSYVNQEYGHSEKVKG
GSAAAAASSVAAGKKGYKRPSY*

BS24717.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cp18-PA 172 CG6517-PA 1..172 1..172 907 100 Plus
CG14191-PA 193 CG14191-PA 55..155 21..116 139 35.6 Plus