BS24721.complete Sequence
983 bp assembled on 2011-06-17
GenBank Submission: KX803171
> BS24721.complete
GAAGTTATCAGTCGACATGACGAGATCGACCTACATTTGGGCGCTGGCCG
CCTGCCTGATCGCCTGTGCAAGCGCCAACTACGGCAGTTCCCAGGGCTAT
GGACCCGAGTCCGGAAGCGGTGCCTCCGATGGCGGTGCTGATGCCGCTTC
AGCGGCCGCAGCAGCTGCCGGCGGTGCCGGTGGAGCTGGTGGCGAGTACG
GTGGTGCTAACGCCGGTGCTGGTGCTCTCGAATCCGGAGCCGATGCCGCC
GGTGTGGCACAGGCTGGCCAGAGCAGCTACGGATCCGACCAGAACATTCC
GTACAAGCCGGTGAACACCAAGGGTAACACCCTGACCTCATCGATCACCT
ACCCGCAGAACAAGGGCGAGATCCTCATCCATCGTCCCGCTCCCATCATT
GTCAAGCGTCCGCCCACCAAGGTGCTGGTGAACCATCCACCATTGGTGGT
TAAGCCCGCTCCCGTGGTGCTCCACAAGCCCCCAGCAATCGTTCTCCGCA
AGGTCTACGTCAAGCACCACCCACGTCGCGTCAAGGTTGAGCCCGTGTTC
GTCAATGTGGTCAAGCCCCCAGCAGAGAAGTACTTTGTCAACGAGAACAA
GCAGGGCTACGGACAGGGCTCGCAGTCCCACGGACACGGCCATGGACACG
GTGGCCATGGACACGGACACAGCGGACACGGACACGGTGGACACGGTGCT
GGACCCCATGGTCCTGGACCCCATGACGGTGGCCGTGCTCTGCCCGCCTA
CGCTTCGGGAGCTGATTCCGCTGCCGCCAGCGCTGGCTATCAGCTGCTCC
AGAGCGGCAACCAGGGTCTGTCCGCTCTTGCCAACATCGCCGGCGAGCGT
GAGGGTCCCTATGGTCCCGCTCCAAGCCATCAGCACTATAGCGCCGGTCC
AGCCGGACATGGCGGCTATGCTGCTCCCGCCTATTAGAAGCTTTCTAGAC
CTATTCGATAAGGCGGCTGCGGGAACGGGGGGG
BS24721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-RB | 921 | CG11213-PB | 1..921 | 17..937 | 4605 | 100 | Plus |
| Cp38-RA | 921 | CG11213-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-RB | 1249 | CG11213-RB | 78..998 | 17..937 | 4605 | 100 | Plus |
| Cp38-RA | 1112 | CG11213-RA | 78..998 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8482185..8483060 | 62..937 | 4380 | 100 | Plus |
| X | 23542271 | X | 8481914..8481959 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:43:51 has no hits.
BS24721.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:17 Download gff for
BS24721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RB | 78..998 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:22 Download gff for
BS24721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RA | 78..998 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:07 Download gff for
BS24721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp38-RA | 78..998 | 17..937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:07 Download gff for
BS24721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8481914..8481958 | 17..61 | 100 | -> | Plus |
| X | 8482185..8483060 | 62..937 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:22 Download gff for
BS24721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8375947..8375991 | 17..61 | 100 | -> | Plus |
| arm_X | 8376218..8377093 | 62..937 | 100 | | Plus |
BS24721.pep Sequence
Translation from 16 to 936
> BS24721.pep
MTRSTYIWALAACLIACASANYGSSQGYGPESGSGASDGGADAASAAAAA
AGGAGGAGGEYGGANAGAGALESGADAAGVAQAGQSSYGSDQNIPYKPVN
TKGNTLTSSITYPQNKGEILIHRPAPIIVKRPPTKVLVNHPPLVVKPAPV
VLHKPPAIVLRKVYVKHHPRRVKVEPVFVNVVKPPAEKYFVNENKQGYGQ
GSQSHGHGHGHGGHGHGHSGHGHGGHGAGPHGPGPHDGGRALPAYASGAD
SAAASAGYQLLQSGNQGLSALANIAGEREGPYGPAPSHQHYSAGPAGHGG
YAAPAY*
BS24721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp38-PB | 306 | CG11213-PB | 1..306 | 1..306 | 1648 | 100 | Plus |
| Cp38-PA | 306 | CG11213-PA | 1..306 | 1..306 | 1648 | 100 | Plus |
