BS24726.complete Sequence
1772 bp assembled on 2011-07-19
GenBank Submission: KX803289
> BS24726.complete
GAAGTTATCAGTCGACATGACCACTTGGACTAGCTTGTTCCTGCTTTTGG
GCCTTGGCCTTCTGGCTGTCGATGCCGCGGCGCCCTGGTGGAAGACCGCT
TCCTTCTACCAGATCTACCCGCGCTCCTTCAAAGACAGTGACGGAAATGG
AGTCGGAGACTTAAACGGGGTGACCGAGAAGCTGGAGTACCTTAAGGAGA
TCGGCGTGACCGCCACCTGGCTGTCTCCTTTTCTGAAATCCCCGATGGCA
GACTTTGGCTATGACATTTCCGATTTCAAGGCGGTCGACCCTCTTTTCGG
AACGATGGAGGACTTCGAGAATATGGTCTCCCGCGCCAAGGAGCTGGGTG
TCAAGATTATTCTCGACTTCGTGCCCAATCATTCCAGTGATGAGTGCGAT
TGGTTCCTTCGTTCGGCTGCCGGCGAGGAGGAGTACAAGGACTACTACAT
GTGGCACCCGGGATTCCTCGATGAGGACGGAACCCGTCGCCCGCCTACCA
ACTGGGTGAGCGTGTTCCGCGGCAGCGCATGGGAGTGGCACGAGGGTCGC
CAGGAGTACTATCTTCATCAATTCCACAAGAAGCAACCGGACTTCAACTT
CCGTAATCCCGTGGTGCGCGAGGAGATGAACAACGTGCTGCGATTCTGGC
TGGAAAAGGGCGTCGATGGTTTCCGCGTGGATGCCATCTACCACGCCTTT
GAGATTGAGGCCGACGAGAACGGAAACTATCCGGATGAGCCCCGCAACGA
TTGGACCAACGATCCAGATGAGTACGGATACACCCACAAGATCTACACTG
TGGATCAGCCAGAGACCCCGCACTTGGTATACGAATGGCGCCAAATTCTT
GAGCAGTTCCAGGCTGACAATGGCGGTGATGAGCGCATATTGATGGTGGA
GACCTGGTCCCCCATTGAAATCGTAATGCATTACTATGGCAACGAAACCG
CCGATGGAGCCCAGATACCGTTCAATTTCCAGCTGATAAGTAATCTGCAC
TACGATTCCGATGCCTATCATTACGAGTACTTGATTAACAACTGGCTTAA
TCTGATGCCAGAGGGGAAGAGCGCCAACTGGGTGATCGGTAACCATGACA
AGAACCGTGTGGGCTCTCGATTCGGAGCCGATCGAGTTGACCTCTTCAAC
ATCCTGCTTCTCACTCTGCCCGGCTGCAGCATCACGTACCAGGGCGAGGA
GCTGGGCATGCTCGACGGATATGTGTCCTGGGAGGACACCGTGGATCCGC
AAGCCTGCAACGGCTACGAGGCAAACTACATGGATAACTCCCGCGACCCA
GCCCGCACTCCGATGCACTGGTCGGATGAGACGATGGCTGGATTCACCAC
TGGCAACAGCACCTGGCTGCCGGTATCCACGGATTATCGCCAGAGGAACG
TGAAAACCGAGCGCGGCGTGTCCCTGAGCCACCTGAACGTGTTCAAGCGT
CTGCAGCAGCTCCGTCAGGAGCCCAGCATTGAAGAAGGATCCGCCGAGGT
CAAGGCTGTTAGCAACTACGTCCTGGCCGTCAAGCGCCACCTGAGCGGCG
ACTTCGTCTACATCTCTCTCTTCAACATCTTCGACTCCATCGAGAATGTG
AACCTATCCAGTGTGTTTGGCAGCCTGCCCGCCAAGTTCCAGTACGCCCT
GGTCACCGAGAAGTCCATCAAGAAGGTCGGCGACCAGGTGTCCGCCGGCA
GCGTCACCCTCATGCCCCACGAGTCCATTGTGCTGCGTTCCACAACAACA
GCTTAGAAGCTTTCTAGACCAT
BS24726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A4-RA | 1740 | CG8693-PA | 1..1740 | 17..1756 | 8700 | 100 | Plus |
| Mal-A3-RA | 1725 | CG8695-PA | 277..438 | 296..457 | 300 | 79 | Plus |
| Mal-A5-RC | 1836 | CG30359-PC | 130..632 | 86..591 | 275 | 70.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A4-RA | 1786 | CG8693-RA | 10..1749 | 17..1756 | 8700 | 100 | Plus |
| Mal-A3-RA | 1795 | CG8695-RA | 313..474 | 296..457 | 300 | 79 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 222..724 | 86..591 | 275 | 70.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8458824..8459635 | 17..828 | 4060 | 100 | Plus |
| 2R | 25286936 | 2R | 8460094..8460546 | 1084..1536 | 2265 | 100 | Plus |
| 2R | 25286936 | 2R | 8460627..8460847 | 1536..1756 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 8459809..8460008 | 885..1084 | 1000 | 100 | Plus |
| 2R | 25286936 | 2R | 8457357..8457518 | 457..296 | 300 | 79 | Minus |
| 2R | 25286936 | 2R | 8459697..8459753 | 829..885 | 285 | 100 | Plus |
| 2R | 25286936 | 2R | 8472078..8472269 | 85..276 | 240 | 75 | Plus |
| 2R | 25286936 | 2R | 8451519..8451801 | 388..106 | 230 | 72.1 | Minus |
| 2R | 25286936 | 2R | 8463133..8463533 | 188..591 | 230 | 71 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:01:29 has no hits.
BS24726.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:58:45 Download gff for
BS24726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8693-RA | 1..1740 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:09 Download gff for
BS24726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A4-RA | 10..1749 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:56 Download gff for
BS24726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A4-RA | 10..1749 | 17..1756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:56 Download gff for
BS24726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8458824..8459635 | 17..828 | 100 | -> | Plus |
| 2R | 8459697..8459753 | 829..885 | 100 | -> | Plus |
| 2R | 8459810..8460008 | 886..1084 | 100 | -> | Plus |
| 2R | 8460095..8460546 | 1085..1536 | 100 | -> | Plus |
| 2R | 8460628..8460847 | 1537..1756 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:09 Download gff for
BS24726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4346329..4347140 | 17..828 | 100 | -> | Plus |
| arm_2R | 4347202..4347258 | 829..885 | 100 | -> | Plus |
| arm_2R | 4347315..4347513 | 886..1084 | 100 | -> | Plus |
| arm_2R | 4347600..4348051 | 1085..1536 | 100 | -> | Plus |
| arm_2R | 4348133..4348352 | 1537..1756 | 100 | | Plus |
BS24726.pep Sequence
Translation from 16 to 1755
> BS24726.pep
MTTWTSLFLLLGLGLLAVDAAAPWWKTASFYQIYPRSFKDSDGNGVGDLN
GVTEKLEYLKEIGVTATWLSPFLKSPMADFGYDISDFKAVDPLFGTMEDF
ENMVSRAKELGVKIILDFVPNHSSDECDWFLRSAAGEEEYKDYYMWHPGF
LDEDGTRRPPTNWVSVFRGSAWEWHEGRQEYYLHQFHKKQPDFNFRNPVV
REEMNNVLRFWLEKGVDGFRVDAIYHAFEIEADENGNYPDEPRNDWTNDP
DEYGYTHKIYTVDQPETPHLVYEWRQILEQFQADNGGDERILMVETWSPI
EIVMHYYGNETADGAQIPFNFQLISNLHYDSDAYHYEYLINNWLNLMPEG
KSANWVIGNHDKNRVGSRFGADRVDLFNILLLTLPGCSITYQGEELGMLD
GYVSWEDTVDPQACNGYEANYMDNSRDPARTPMHWSDETMAGFTTGNSTW
LPVSTDYRQRNVKTERGVSLSHLNVFKRLQQLRQEPSIEEGSAEVKAVSN
YVLAVKRHLSGDFVYISLFNIFDSIENVNLSSVFGSLPAKFQYALVTEKS
IKKVGDQVSAGSVTLMPHESIVLRSTTTA*
BS24726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A4-PA | 579 | CG8693-PA | 1..579 | 1..579 | 3137 | 100 | Plus |
| Mal-A3-PA | 574 | CG8695-PA | 7..571 | 7..573 | 1923 | 60.1 | Plus |
| Mal-A5-PA | 630 | CG30359-PA | 44..598 | 24..578 | 1899 | 61 | Plus |
| Mal-A5-PC | 611 | CG30359-PC | 44..579 | 24..578 | 1816 | 59 | Plus |
| Mal-A5-PB | 534 | CG30359-PB | 1..502 | 77..578 | 1660 | 59.4 | Plus |
