BS24729.complete Sequence
776 bp assembled on 2011-06-17
GenBank Submission: KX801643
> BS24729.complete
GAAGTTATCAGTCGACATGGAACGCTGGCATGATCGCGTGGCTGTGGTCA
CGGGTGCCAGCTCCGGGATAGGAGCTGCAGTGGCACGCCACTTGGTGAGT
GCAGGGGTCATTGTTGTAGGTCTGGCCCGTCGGGTCGACCGCATGAAGGC
TATCAAGGAACAACTGCCGCCGGAGCTGCAGGGCCGCCTACATGCCATCC
ACTGCGATGTCGAAGATCTGGACTCGGTGACGGCTGCCTTTGACTGGATC
GAGGAGCAGCTCGGCGGATGTGACATCCTGGTGAACAACGCGGGATGCCT
GAACCCCGGACAACTTCTCACCCTGGAGCTAGAGCAGCTGCAGCAGGTCC
TGAACGTGAACTTGATGGGCGTGGTCATCTGCACCCGCCGCGCCTTTCGC
TCAATGCAGCAACGCGAGGTGGATGGCCATGTGATCCTCATTAACAGCCT
AACGGGCCGTAACATCATCAATCCACCTGGTGACGAGCTGCAGGTGCTCA
ACATGTATCCGCTTACCAAGCACGGGGTTACGGCCATGTTGGAAGTCCTG
CGACAGGAGCTGCGCGGATTCAAGACTAAGATAAAGGTCACAAGCATCAC
TCCAGGTGTGACCGATACGGAGATTCTGCCCTCCGGCTACGGTATTTTGC
CGATGCTAAAACCGGATGACATTGCCGCAGGCATCATGTACGTGCTCGGC
ACACCCGCACATGTCCAGGTGCACGAGCTGACCATTAAGCCGTTAGGAGA
GCCTTTCTAAAAGCTTTCTAGACCAT
BS24729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40486-RC | 744 | CG40486-PC | 1..744 | 17..760 | 3705 | 99.9 | Plus |
CG40486-RB | 744 | CG40486-PB | 1..744 | 17..760 | 3705 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40486-RC | 960 | CG40486-RC | 127..870 | 17..760 | 3705 | 99.9 | Plus |
CG40486-RB | 940 | CG40486-RB | 127..870 | 17..760 | 3705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22959390..22959965 | 592..17 | 2865 | 99.8 | Minus |
X | 23542271 | X | 22958946..22959113 | 760..593 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:22 has no hits.
BS24729.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:20 Download gff for
BS24729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40486-RB | 112..853 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:33 Download gff for
BS24729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40486-RB | 112..853 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:16 Download gff for
BS24729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40486-RB | 127..868 | 17..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:16 Download gff for
BS24729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22958948..22959113 | 593..758 | 100 | <- | Minus |
X | 22959390..22959965 | 17..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:33 Download gff for
BS24729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22360784..22360949 | 593..758 | 100 | <- | Minus |
arm_X | 22361226..22361801 | 17..592 | 99 | | Minus |
BS24729.pep Sequence
Translation from 16 to 759
> BS24729.pep
MERWHDRVAVVTGASSGIGAAVARHLVSAGVIVVGLARRVDRMKAIKEQL
PPELQGRLHAIHCDVEDLDSVTAAFDWIEEQLGGCDILVNNAGCLNPGQL
LTLELEQLQQVLNVNLMGVVICTRRAFRSMQQREVDGHVILINSLTGRNI
INPPGDELQVLNMYPLTKHGVTAMLEVLRQELRGFKTKIKVTSITPGVTD
TEILPSGYGILPMLKPDDIAAGIMYVLGTPAHVQVHELTIKPLGEPF*
BS24729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40486-PC | 247 | CG40486-PC | 1..247 | 1..247 | 1267 | 100 | Plus |
CG40486-PB | 247 | CG40486-PB | 1..247 | 1..247 | 1267 | 100 | Plus |
CG40485-PB | 247 | CG40485-PB | 1..247 | 1..247 | 798 | 61.1 | Plus |
antdh-PA | 250 | CG1386-PA | 1..248 | 1..245 | 694 | 54.8 | Plus |
CG8757-PB | 252 | CG8757-PB | 1..252 | 1..247 | 599 | 47.8 | Plus |