Clone BS24729 Report

Search the DGRC for BS24729

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:247
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG40486-RB
Protein status:BS24729.pep: full length peptide match
Sequenced Size:776

Clone Sequence Records

BS24729.complete Sequence

776 bp assembled on 2011-06-17

GenBank Submission: KX801643

> BS24729.complete
GAAGTTATCAGTCGACATGGAACGCTGGCATGATCGCGTGGCTGTGGTCA
CGGGTGCCAGCTCCGGGATAGGAGCTGCAGTGGCACGCCACTTGGTGAGT
GCAGGGGTCATTGTTGTAGGTCTGGCCCGTCGGGTCGACCGCATGAAGGC
TATCAAGGAACAACTGCCGCCGGAGCTGCAGGGCCGCCTACATGCCATCC
ACTGCGATGTCGAAGATCTGGACTCGGTGACGGCTGCCTTTGACTGGATC
GAGGAGCAGCTCGGCGGATGTGACATCCTGGTGAACAACGCGGGATGCCT
GAACCCCGGACAACTTCTCACCCTGGAGCTAGAGCAGCTGCAGCAGGTCC
TGAACGTGAACTTGATGGGCGTGGTCATCTGCACCCGCCGCGCCTTTCGC
TCAATGCAGCAACGCGAGGTGGATGGCCATGTGATCCTCATTAACAGCCT
AACGGGCCGTAACATCATCAATCCACCTGGTGACGAGCTGCAGGTGCTCA
ACATGTATCCGCTTACCAAGCACGGGGTTACGGCCATGTTGGAAGTCCTG
CGACAGGAGCTGCGCGGATTCAAGACTAAGATAAAGGTCACAAGCATCAC
TCCAGGTGTGACCGATACGGAGATTCTGCCCTCCGGCTACGGTATTTTGC
CGATGCTAAAACCGGATGACATTGCCGCAGGCATCATGTACGTGCTCGGC
ACACCCGCACATGTCCAGGTGCACGAGCTGACCATTAAGCCGTTAGGAGA
GCCTTTCTAAAAGCTTTCTAGACCAT

BS24729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG40486-RC 744 CG40486-PC 1..744 17..760 3705 99.9 Plus
CG40486-RB 744 CG40486-PB 1..744 17..760 3705 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG40486-RC 960 CG40486-RC 127..870 17..760 3705 99.9 Plus
CG40486-RB 940 CG40486-RB 127..870 17..760 3705 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22959390..22959965 592..17 2865 99.8 Minus
X 23542271 X 22958946..22959113 760..593 840 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:44:22 has no hits.

BS24729.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:20 Download gff for BS24729.complete
Subject Subject Range Query Range Percent Splice Strand
CG40486-RB 112..853 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:33 Download gff for BS24729.complete
Subject Subject Range Query Range Percent Splice Strand
CG40486-RB 112..853 17..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:16 Download gff for BS24729.complete
Subject Subject Range Query Range Percent Splice Strand
CG40486-RB 127..868 17..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:16 Download gff for BS24729.complete
Subject Subject Range Query Range Percent Splice Strand
X 22958948..22959113 593..758 100 <- Minus
X 22959390..22959965 17..592 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:33 Download gff for BS24729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22360784..22360949 593..758 100 <- Minus
arm_X 22361226..22361801 17..592 99   Minus

BS24729.pep Sequence

Translation from 16 to 759

> BS24729.pep
MERWHDRVAVVTGASSGIGAAVARHLVSAGVIVVGLARRVDRMKAIKEQL
PPELQGRLHAIHCDVEDLDSVTAAFDWIEEQLGGCDILVNNAGCLNPGQL
LTLELEQLQQVLNVNLMGVVICTRRAFRSMQQREVDGHVILINSLTGRNI
INPPGDELQVLNMYPLTKHGVTAMLEVLRQELRGFKTKIKVTSITPGVTD
TEILPSGYGILPMLKPDDIAAGIMYVLGTPAHVQVHELTIKPLGEPF*

BS24729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG40486-PC 247 CG40486-PC 1..247 1..247 1267 100 Plus
CG40486-PB 247 CG40486-PB 1..247 1..247 1267 100 Plus
CG40485-PB 247 CG40485-PB 1..247 1..247 798 61.1 Plus
antdh-PA 250 CG1386-PA 1..248 1..245 694 54.8 Plus
CG8757-PB 252 CG8757-PB 1..252 1..247 599 47.8 Plus