Clone BS24730 Report

Search the DGRC for BS24730

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:247
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG3640-RA
Protein status:BS24730.pep: gold
Sequenced Size:923

Clone Sequence Records

BS24730.complete Sequence

923 bp assembled on 2011-06-21

GenBank Submission: KX805508

> BS24730.complete
GAAGTTATCAGTCGACATGTTTTCGATCAGAGTGTGGTTCATCTGCCTGG
TGATAGTTACCCTCAACTCCTTTCCCGCCTACTCCTGGGATTATTGCCAA
GAGCACTGGTGTCCGCGTTCCACCGACCACGTAGCGTGCAACAACAACGG
GACGTTTGGCCTCGATTGCGGAAGGGAGGCCAGGCTAATCCCGCTCAGCA
ATCAGTTGCAGGCGTTCATTGTGCACCAGGTAAACTTCTATCGCAACCAG
GTGGCTTCGGGCGGACTCTCCGCCTTCGGACCCGCCCGCCGAATGGCTAG
TGTCCGCTGGGATCCCGAGCTGGCACAGCTGGCTGAGCTGGCGGCAAAGA
GGTGCAGTTTGTCCGGCGATGGATGCCGCAACACCAGGCGATTCAAGCAC
GTGGGCCAGCTGACGGGCCACGTAATCTTCAGTGCGGGAAAGCACAGCGA
CTTGGAGCTGCTGCGCCACAAGATCTCGAATTGGTTTGGCCAGTACATGA
GAGCCAGCAAGGATCTGCAAGCCGCCGATCCATCAAGCAACATCAGCAGC
TTCCGGCAGTTGATACAGGAAAGCTCCACCCACATGGGATGCGGCGTGCT
CCGCCAGAGGAGCCACATGCTGTGGCACCAGCAGTTCATCGTCTGTAACT
TTGCCCGTAGGAATATGCCCCGCGAGCAGGTCTACCAGGTGGGCGTGGCT
GCCACAGGATGCAGGTCGGGAAGGAATCCTCGCTATCCCAATCTCTGCGC
TCTGCAGGAAGAATACGATGTGAACGCCGTCGACCGTTTTCACTCAAAGC
GGCCACTTAGGATAAGGTTCAAGTACAGCGCATCCCATCCATCGAAAGTT
TTGGGTGCTGATCGTGATGTAGCCTTCCATCCCAATATCAAGTTGGGACG
TCTTTAAAAGCTTTCTAGACCAT

BS24730.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3640-RA 891 CG3640-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3640-RA 994 CG3640-RA 9..899 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24639905..24640661 151..907 3785 100 Plus
2R 25286936 2R 24639696..24639830 17..151 675 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:25:19 has no hits.

BS24730.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 15:35:21 Download gff for BS24730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3640-RA 16..897 24..905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:35 Download gff for BS24730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3640-RA 16..897 24..905 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:48 Download gff for BS24730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3640-RA 16..897 24..905 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:48 Download gff for BS24730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24639703..24639830 24..151 100 -> Plus
2R 24639906..24640659 152..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:35 Download gff for BS24730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20527226..20527353 24..151 100 -> Plus
arm_2R 20527429..20528182 152..905 100   Plus

BS24730.pep Sequence

Translation from 16 to 906

> BS24730.pep
MFSIRVWFICLVIVTLNSFPAYSWDYCQEHWCPRSTDHVACNNNGTFGLD
CGREARLIPLSNQLQAFIVHQVNFYRNQVASGGLSAFGPARRMASVRWDP
ELAQLAELAAKRCSLSGDGCRNTRRFKHVGQLTGHVIFSAGKHSDLELLR
HKISNWFGQYMRASKDLQAADPSSNISSFRQLIQESSTHMGCGVLRQRSH
MLWHQQFIVCNFARRNMPREQVYQVGVAATGCRSGRNPRYPNLCALQEEY
DVNAVDRFHSKRPLRIRFKYSASHPSKVLGADRDVAFHPNIKLGRL*

BS24730.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3640-PA 296 CG3640-PA 1..296 1..296 1596 100 Plus
CG17575-PA 291 CG17575-PA 6..283 7..251 427 34.2 Plus
CG17575-PB 298 CG17575-PB 6..290 7..251 420 33.3 Plus
CG42564-PA 500 CG10284-PA 54..284 25..251 357 34.7 Plus
CG9822-PA 263 CG9822-PA 13..259 11..253 345 33.2 Plus