BS24736.complete Sequence
579 bp assembled on 2011-06-17
GenBank Submission: KX804935
> BS24736.complete
GAAGTTATCAGTCGACATGCGGACAGGGCGTATACTTGTTGCTTTGATTT
TTCTAGGTTTAATAATTCCCTTTCGGGCTGCAAAGTGCAGGGCAGCGCCC
AAATCTGTGCAAAATGTACACGTTTGTTGCTCAGCACCCCTGCCTAACTG
GGGAGTTTTCAACAGAGAGTGTCATAAATCGGCCATTCAAGCAAGTTGCC
GTTTAGATTGCGATTTCAATGCCAGCTCGGTTCTGCAGGGAAATCGATTG
ATCCAAGCGAAAGTTCGACCCATGTTGGAGCGCGCCTTTTCCAACGAACC
CACCATCGATGCATATGAGTCCAACTTTGCCAAATGTTCAACGGTGGTCA
GGAGCAAATACCAGGAGCTATCTCCGCTGAGTCGTCAAAGCGACGCCTGT
GACAGACACGCCCTCTTCTACAGCCTTTGTGCGTATGCTCGCTTGATTTT
CACCTGTCCGGACAAAATGTGGCAAAGAAATAACAGGATGTGCCAGGAGG
CCAAGGCCTATGCGAAAAAATGTCCTTGGCCAGCGCTAAAAATGTTTATG
AGGAATACCTAAAAGCTTTCTAACACCAT
BS24736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50a-RA | 546 | CG30067-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
| Obp50a-RB | 603 | CG30067-PB | 238..603 | 197..562 | 1830 | 100 | Plus |
| Obp50a-RB | 603 | CG30067-PB | 1..180 | 17..196 | 900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50a-RA | 671 | CG30067-RA | 93..641 | 17..565 | 2745 | 100 | Plus |
| Obp50a-RB | 728 | CG30067-RB | 330..698 | 197..565 | 1845 | 100 | Plus |
| Obp50a-RB | 728 | CG30067-RB | 93..272 | 17..196 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14370361..14370729 | 565..197 | 1845 | 100 | Minus |
| 2R | 25286936 | 2R | 14370929..14371024 | 112..17 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 14370787..14370875 | 196..108 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:44:06 has no hits.
BS24736.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:19 Download gff for
BS24736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50a-RA | 93..636 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:28 Download gff for
BS24736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50a-RA | 93..636 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:12 Download gff for
BS24736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50a-RA | 93..636 | 17..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:12 Download gff for
BS24736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14370366..14370729 | 197..560 | 100 | <- | Minus |
| 2R | 14370787..14370870 | 113..196 | 100 | <- | Minus |
| 2R | 14370929..14371024 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:28 Download gff for
BS24736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10257871..10258234 | 197..560 | 100 | <- | Minus |
| arm_2R | 10258292..10258375 | 113..196 | 100 | <- | Minus |
| arm_2R | 10258434..10258529 | 17..112 | 100 | | Minus |
BS24736.pep Sequence
Translation from 16 to 561
> BS24736.pep
MRTGRILVALIFLGLIIPFRAAKCRAAPKSVQNVHVCCSAPLPNWGVFNR
ECHKSAIQASCRLDCDFNASSVLQGNRLIQAKVRPMLERAFSNEPTIDAY
ESNFAKCSTVVRSKYQELSPLSRQSDACDRHALFYSLCAYARLIFTCPDK
MWQRNNRMCQEAKAYAKKCPWPALKMFMRNT*
BS24736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50a-PA | 181 | CG30067-PA | 1..181 | 1..181 | 972 | 100 | Plus |
| Obp50a-PB | 200 | CG30067-PB | 1..200 | 1..181 | 942 | 90.5 | Plus |
| Obp50d-PA | 173 | CG30074-PA | 1..170 | 6..169 | 170 | 24.6 | Plus |
