BS24741.complete Sequence
1307 bp assembled on 2011-06-22
GenBank Submission: KX800413
> BS24741.complete
GAAGTTATCAGTCGACATGAGGAAATCAGCGGGAGGATTTCATTCCACAT
CCAATGAAGATGGGCAGCATGGCGATGGCTCCTCCGTGCGACTACTGAGA
ATTCCCAGAGCCGCACCTGCGATGGAGAACTACGGATTTCAGCTGACCCG
CAGCAAATGGGATCCCTATCCCTGGGTTTGCGAAGTGGCAGCCGGCACAC
CTGCCGCTCTCTGCGGCCTGAAACCCGGCGATTGCGTTCTGGAGGTAAAT
GGCAACGATGTTTTAGGCTTGAGAGTGTCTGAAATCGCCAAAATGGTGAA
GAGTCAAAAGGACTGCGTCACAATTCTCTGTTGGAACAGTGAATGTGATA
AGGACTGTGATACTAATAGCATCTGCTGCGCCCCCATGCCCACCAGTTTG
CGCCGCCTGTCCCTCGTCCTGGAGAGCATCCTGCGCCTCGTCGAGTGTCC
TGTCTGCGGGGTGACCATCTCACCGCCGGCGATGCAGTGCCAAAACGGAC
ACCTGCTCTGCGTGGACTGTCGCATCCGCTCGGAGCGATGTCCTGTCTGC
CGGGACTTCTACACTCCCCGCCGAGCGCTGTTGGCGGAGCAAATTTTCCT
GACCATTGCCAACGCCTTCGAGATGTGCCGCTCGGAGAACAAGCTGCGGC
AGAAGCTCTTTGCCGGGATAACACGGCCAGTCGTGGGCCGACAGGACAGG
ATAACCGGACAGGACACCTGGCGAAAGCGCAGGCCAGTGCTGCCAACGAA
CAAGTTCCTAACCAAGTTGCTTGAGGGCTGCGCCTACTCGACGGATAACC
TCAGTCCCTCGAATGCCGCTACTCTGCTGCGGACTAATACCACGGACGTC
GCTGGCGACTCCAGTGAAATCCCGGCCAGAACATCGCCAGTGACAGCCAC
GCCCCCCGAAAGGACAACAATGCATGCCACGCTTGACGCGAATGCGGCGC
ATCCTTCACTCTCGACGAATGATTTACAGCAGGAAGGAGTTAAGCCGAAT
GCCGAGGGCGTTGACGAGGAATCCGGAACGAACAGCAGCCACATCTCTGC
CACATCCTTGCATGGCCCTCCGCTACCAGCCTCCGTTAGCCCGGGCATCA
ATGAATCTTCCGGATTGCAACCCGTTCGCATACCTCCTGTCACTCCAAGC
CAAGATTTGCCCCAGCAGGTTGTCCAAACTAAGCCGGCCTCGCTGTTGTA
CCGCTGTCCCTGCAAGCTGCAGGATCCACAGGATCCTGCAAAGGACCTCC
ACCAGAACTGCTGCTACAAATCCGCTTTCCGTCTGCTTTGAAAGCTTTCT
AGACCAT
BS24741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6688-RA | 1275 | CG6688-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6688-RA | 1778 | CG6688-RA | 103..1377 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23014151..23015074 | 368..1291 | 4620 | 100 | Plus |
| 3R | 32079331 | 3R | 23012514..23012674 | 17..177 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 23013914..23014038 | 243..367 | 625 | 100 | Plus |
| 3R | 32079331 | 3R | 23012741..23012812 | 175..246 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:54 has no hits.
BS24741.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-22 09:52:18 Download gff for
BS24741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6688-RA | 103..1376 | 17..1290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:33 Download gff for
BS24741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6688-RA | 103..1376 | 17..1290 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:25 Download gff for
BS24741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6688-RA | 103..1376 | 17..1290 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:25 Download gff for
BS24741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23012514..23012672 | 17..175 | 100 | -> | Plus |
| 3R | 23012742..23012810 | 176..244 | 100 | -> | Plus |
| 3R | 23013916..23014038 | 245..367 | 100 | -> | Plus |
| 3R | 23014151..23015073 | 368..1290 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:33 Download gff for
BS24741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18838236..18838394 | 17..175 | 100 | -> | Plus |
| arm_3R | 18838464..18838532 | 176..244 | 100 | -> | Plus |
| arm_3R | 18839638..18839760 | 245..367 | 100 | -> | Plus |
| arm_3R | 18839873..18840795 | 368..1290 | 100 | | Plus |
BS24741.pep Sequence
Translation from 16 to 1290
> BS24741.pep
MRKSAGGFHSTSNEDGQHGDGSSVRLLRIPRAAPAMENYGFQLTRSKWDP
YPWVCEVAAGTPAALCGLKPGDCVLEVNGNDVLGLRVSEIAKMVKSQKDC
VTILCWNSECDKDCDTNSICCAPMPTSLRRLSLVLESILRLVECPVCGVT
ISPPAMQCQNGHLLCVDCRIRSERCPVCRDFYTPRRALLAEQIFLTIANA
FEMCRSENKLRQKLFAGITRPVVGRQDRITGQDTWRKRRPVLPTNKFLTK
LLEGCAYSTDNLSPSNAATLLRTNTTDVAGDSSEIPARTSPVTATPPERT
TMHATLDANAAHPSLSTNDLQQEGVKPNAEGVDEESGTNSSHISATSLHG
PPLPASVSPGINESSGLQPVRIPPVTPSQDLPQQVVQTKPASLLYRCPCK
LQDPQDPAKDLHQNCCYKSAFRLL*
BS24741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6688-PA | 424 | CG6688-PA | 1..424 | 1..424 | 2262 | 100 | Plus |
| CG34375-PA | 567 | CG34375-PA | 16..187 | 40..201 | 334 | 40.7 | Plus |
| CG34375-PC | 568 | CG34375-PC | 16..188 | 40..201 | 334 | 40.5 | Plus |
| CG34375-PB | 568 | CG34375-PB | 16..188 | 40..201 | 334 | 40.5 | Plus |
| sinah-PC | 351 | CG13030-PC | 100..155 | 138..193 | 155 | 50 | Plus |
