BS24746.complete Sequence
2207 bp assembled on 2011-07-19
GenBank Submission: KX802364
> BS24746.complete
GAAGTTATCAGTCGACATGTCAGATGCAGACTACTTGTTCGCTCTGAACC
TGCAGAACCAGCTAAATGCGGAGTCAGACCAAAGTTACACAGCCGCGGAT
GCCAGCAATGACAGGGACTATCAGCTGGCACGCAGGATTCAGAACCTAAT
AAACGAGGGCGATGAGGACGGTGCTAGCGAGCTGGACAGCAGCATTCAGT
TCGTCTACCCCAAATCGAATCAGCCAAAATCAACAAAAATGGAGAACTCT
GAAATCAAAAACAAAAAACGAGAAGCGGCTAAAAAGAAGCCAGTGCGCGC
TATTCAGGCCAGCCATGATGACTATCTGAATAAGACGATGAATCTGGTGG
ATCCGGAGTGGGAGCTGGTCGATCCCACCCCGGACATCTACGCCATGTTC
ATACGCTTCGACGAGAAGTTCTTCCAGGAGCGCCTGGGCGCCGTCTCCCT
GGAATGGAGCAAGAAGATGTACTCGTGCGCTGGAATCTGCTACCAGCGTG
GCAATCGCTTCGTCAAACAGGTGACCATTCGGCTCAGTGAGCCGCTGCTA
AAGTTGCGTCCGCGCAAGGATCTCGTGGAAACGCTCTTGCACGAAATGAT
CCATGCCTACTGCTTTGTGCTCAATATACGCGAGGGTAACGGTGGCCATG
GACCCAATTTCAAGCGCATCATGGAGACGATCAATAAGGTGGCGGGCACC
AACATCACCGTTTACCACACTTTTCACGATGAGGTGGCCTCCTATCGCAC
CCACATCTGGCGCTGCACGGGCATTTGCCGAGAGCGCTCACCCTTTTGGG
GCTATGTGAAGCGGACCAGCAACCGAGCGCCCGGTCCGAACGATCAGTGG
TGGAAGATGCATCAACGTGAGTGCAGCGGCACCTTTTTGAAGTTGAGTGA
ACCCCCGAAGGCCCCCAAGCCGGAGACCAAGTCAAGGGCTAAGAAGTCCA
CACCGGCGGTGGCCGCGCCCAAGGAAGACATACGCAACTGGTTCGGCCAG
CCGTCAGCCAAGAAAGCGGCCACCGGCACAGTCTTACTAGGCGATCTGGC
GAAGGCGGTGCCGCCGACTTCTTATCCCGGACTCTCTTCCGAACCCTTTG
CATTGCCCAAGACACCAGCTGCTGGCACAAAAGGCAACAAAAGCGGCGGA
TTCAATGAACTGGACAAATCAGGTTCGAAAGCCACCACTGAAATGAGCGG
ACAGGGCTACAGTCTTGGTGGCTCTAGCGCTATAGAACACATAGATCTTA
GTGACACTGATGTTCCCGATTCCGCTAAACTTCGTCAAATTCGACTTCAG
CGTTTTAGCGAAGATGCTTCCAACAAGCGACAGAATAAGAAAAAGAGGCG
TCGTGTTTCCAGCGACAGCGAGATAATCAACTGGGAGTCCTACGATGATG
ACGTAATGGTCAGGGATGTTCATACGCCCATCGTCAACTTGGTCGAAAGC
TCTAGTGATGAAGAGGAGATGAAGATGCCAGCTGGCAGAAAAACCATGAC
CAGTCAGGAGCGCACGCAGATCATCAAGCGCCAGGTAATGGAGGATGAGT
TGACCTTGTGTGAGGACGATATCCTCTTAATTGATGATGAATACGACGAT
GAGGTGGCCGCAAATGAATCTTTAACAGCCGCCACGGAGCTAGCTGACCA
ATCCATTATAGATGATATTTTTGGAGAGGACACCCTGCTGAAGGAGTTCC
AGCGTGAGAACGACGTGCAGCCCAGTTGCTCAAGCTACGCCAAAAGAATT
GAGAACGACATCGTATCTTGTCCCATTTGCTTTGAGAAAATGAGGCGCAC
TGAGTTGTCCAATCACTTCGATGGCTGCGCCATTATGGTGCGCTTGGAAC
CGCCATCGTTTAAGCCTAAAAACCGCCGAACAACTGCTTCCTTAACCTCA
AAGGACTCGTCGGGAGCTTCCACATCACGCCGCGCTAAATCGAAAGCAAA
GTCATCAAAAGGAATTCTTCGCAGCTCCGGTTACACAGAAGGGGAGATCG
ACAAGCTCAACCTGAGCTCCTCTACCGACTCGTCTACTCTGCCGTCTAGC
GAGGACGAACTTACTCCGCGTCAGCGCCGCCAGCGCAACCTCTTCAAAGA
GACCGTAGGCTGCCCCAGATGTGGCCTGGAGATCATGCCTCTACACCTGA
AGGTCCATGGATCCGTCTGCGCTGGTCGCAAGAAGCGCTAGAAGCTTTCT
AGACCAT
BS24746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9203-RA | 2175 | CG9203-PA | 1..2175 | 17..2191 | 10875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9203-RA | 2349 | CG9203-RA | 84..2259 | 16..2191 | 10880 | 100 | Plus |
| tkv-RC | 2885 | CG14026-RC | 32..160 | 2191..2063 | 270 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15472894..15474496 | 2191..589 | 8015 | 100 | Minus |
| X | 23542271 | X | 15474603..15474959 | 589..233 | 1785 | 100 | Minus |
| X | 23542271 | X | 15475039..15475161 | 232..110 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 5243488..5243738 | 1472..1733 | 525 | 81.7 | Plus |
| X | 23542271 | X | 15475223..15475317 | 110..16 | 475 | 100 | Minus |
| 2L | 23513712 | 2L | 5243945..5244108 | 2028..2191 | 400 | 82.9 | Plus |
| 2L | 23513712 | 2L | 5243850..5243933 | 1906..1989 | 285 | 89.3 | Plus |
| 2L | 23513712 | 2L | 5243740..5243784 | 1754..1798 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:03:07 has no hits.
BS24746.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 13:11:30 Download gff for
BS24746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9203-RA | 62..2236 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:04 Download gff for
BS24746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9203-RA | 85..2259 | 17..2191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:46 Download gff for
BS24746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9203-RA | 85..2259 | 17..2191 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:46 Download gff for
BS24746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15472894..15474495 | 590..2191 | 100 | <- | Minus |
| X | 15474603..15474959 | 233..589 | 100 | <- | Minus |
| X | 15475039..15475161 | 110..232 | 100 | <- | Minus |
| X | 15475224..15475316 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:04 Download gff for
BS24746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15366927..15368528 | 590..2191 | 100 | <- | Minus |
| arm_X | 15368636..15368992 | 233..589 | 100 | <- | Minus |
| arm_X | 15369072..15369194 | 110..232 | 100 | <- | Minus |
| arm_X | 15369257..15369349 | 17..109 | 100 | | Minus |
BS24746.pep Sequence
Translation from 16 to 2190
> BS24746.pep
MSDADYLFALNLQNQLNAESDQSYTAADASNDRDYQLARRIQNLINEGDE
DGASELDSSIQFVYPKSNQPKSTKMENSEIKNKKREAAKKKPVRAIQASH
DDYLNKTMNLVDPEWELVDPTPDIYAMFIRFDEKFFQERLGAVSLEWSKK
MYSCAGICYQRGNRFVKQVTIRLSEPLLKLRPRKDLVETLLHEMIHAYCF
VLNIREGNGGHGPNFKRIMETINKVAGTNITVYHTFHDEVASYRTHIWRC
TGICRERSPFWGYVKRTSNRAPGPNDQWWKMHQRECSGTFLKLSEPPKAP
KPETKSRAKKSTPAVAAPKEDIRNWFGQPSAKKAATGTVLLGDLAKAVPP
TSYPGLSSEPFALPKTPAAGTKGNKSGGFNELDKSGSKATTEMSGQGYSL
GGSSAIEHIDLSDTDVPDSAKLRQIRLQRFSEDASNKRQNKKKRRRVSSD
SEIINWESYDDDVMVRDVHTPIVNLVESSSDEEEMKMPAGRKTMTSQERT
QIIKRQVMEDELTLCEDDILLIDDEYDDEVAANESLTAATELADQSIIDD
IFGEDTLLKEFQRENDVQPSCSSYAKRIENDIVSCPICFEKMRRTELSNH
FDGCAIMVRLEPPSFKPKNRRTTASLTSKDSSGASTSRRAKSKAKSSKGI
LRSSGYTEGEIDKLNLSSSTDSSTLPSSEDELTPRQRRQRNLFKETVGCP
RCGLEIMPLHLKVHGSVCAGRKKR*
BS24746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9203-PA | 724 | CG9203-PA | 1..724 | 1..724 | 3774 | 100 | Plus |
