BS24751.complete Sequence
917 bp assembled on 2011-06-17
GenBank Submission: KX804911
> BS24751.complete
GAAGTTATCAGTCCACATGAAACGTCTTCTATTTCTCTTTCTGCTTGCTG
GTATTTTAATAAACAATCATGCCCTGCAGCACAACGAGACCATTGACTTG
AAAAAGTTGGCCAAAATAGTGCTGCCTCCGGCTTATCAAACCCGTGTTAT
TGGTGGTCGGGTGACCACCAACGCGAAATTGGGCGGATACCTGGTGGCAA
TGCGGTACTTCAATAATTTCATCTGCGGCGGTACTTTAATCCATGAGCTC
ATTGTCCTCACGGCGGCGCACTGTTTTGAGGACCGAGCAGAAAAGGAAGC
CTGGAGCGTGGATGGTGGCATCTCCAGACTCAGCGAAAAAGGCATTCGTC
GTCAAGTTAAGCGCTTCATTAAGTCGGCCCAGTTTAAAATGGTCACCATG
AACATGGACGTGGCTGTGGTGCTACTGAATCGACCGATGGTTGGAAAAAA
CATCGGAACTCTATCCTTGTGCAGTACGGCCTTGACTCCGGGACAGACAA
TGGACGTATCCGGCTGGGGAATGACAAATCCGGATGACGAGGGTCCGGGG
CATATGCTCCGCACGGTATCAGTACCTGTGATTGAAAAAAGAATATGCCG
CGAAGCCTATCGGGAATCAGTCTCCATATCGGATAGCATGTTTTGTGCCT
CAGTTTTGGGAAAAAAGGATGCTTGCACCTACGACTCAGGAGGTCCCTTG
GTTTACGAAAAACAAGTCTGCGGCATTGTGTCCTTTGGGATCGGATGTGC
GAGCAGGCGTTATCCCGGTGTCTATACGGATGTTCATTACGTAAAGCCAT
TTATTGTAAAAGGCATCAAAGCTTTGCTCTCCCGGTCCAGGTAAAAGCTT
TCTAGACCATTCGTTTGGCGCGCGAAAAGGGAGGTAAAGTGGTCAATAAA
TCTAATAAAATCCTAAT
BS24751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-RA | 828 | CG10586-PA | 1..828 | 17..844 | 4125 | 99.9 | Plus |
| CG11037-RA | 879 | CG11037-PA | 703..866 | 665..828 | 340 | 80.5 | Plus |
| CG10587-RC | 870 | CG10587-PC | 667..809 | 638..780 | 280 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-RA | 883 | CG10586-RA | 21..849 | 16..844 | 4130 | 99.9 | Plus |
| CG11037-RA | 913 | CG11037-RA | 705..868 | 665..828 | 340 | 80.5 | Plus |
| CG10588-RB | 3727 | CG10588-RB | 3510..3673 | 828..665 | 340 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20956126..20956730 | 620..16 | 3025 | 100 | Minus |
| 3L | 28110227 | 3L | 20955789..20956015 | 844..618 | 1120 | 99.6 | Minus |
| 3L | 28110227 | 3L | 20960443..20960606 | 828..665 | 340 | 80.5 | Minus |
| 3L | 28110227 | 3L | 20961623..20961765 | 780..638 | 280 | 79.7 | Minus |
Blast to na_te.dros performed 2014-11-26 14:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 1844..1873 | 52..23 | 114 | 86.7 | Minus |
| G4 | 3856 | G4 G4_DM 3856bp | 2264..2303 | 61..21 | 112 | 78 | Minus |
BS24751.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:28 Download gff for
BS24751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10586-RA | 22..849 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:09 Download gff for
BS24751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sems-RA | 22..849 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:48 Download gff for
BS24751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sems-RA | 22..849 | 17..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:48 Download gff for
BS24751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20956126..20956729 | 17..620 | 100 | | Minus |
| 3L | 20955789..20956012 | 621..844 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:09 Download gff for
BS24751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20948889..20949112 | 621..844 | 99 | <- | Minus |
| arm_3L | 20949226..20949829 | 17..620 | 100 | | Minus |
BS24751.pep Sequence
Translation from 16 to 843
> BS24751.pep
MKRLLFLFLLAGILINNHALQHNETIDLKKLAKIVLPPAYQTRVIGGRVT
TNAKLGGYLVAMRYFNNFICGGTLIHELIVLTAAHCFEDRAEKEAWSVDG
GISRLSEKGIRRQVKRFIKSAQFKMVTMNMDVAVVLLNRPMVGKNIGTLS
LCSTALTPGQTMDVSGWGMTNPDDEGPGHMLRTVSVPVIEKRICREAYRE
SVSISDSMFCASVLGKKDACTYDSGGPLVYEKQVCGIVSFGIGCASRRYP
GVYTDVHYVKPFIVKGIKALLSRSR*
BS24751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sems-PA | 275 | CG10586-PA | 1..275 | 1..275 | 1425 | 100 | Plus |
| CG11037-PA | 292 | CG11037-PA | 41..291 | 23..273 | 871 | 66.5 | Plus |
| CG10587-PA | 276 | CG10587-PA | 1..275 | 1..273 | 855 | 59.6 | Plus |
| CG10587-PC | 289 | CG10587-PC | 1..288 | 1..273 | 831 | 56.9 | Plus |
| CG10587-PD | 225 | CG10587-PD | 1..200 | 1..198 | 554 | 54.5 | Plus |
