BS24758.complete Sequence
1718 bp assembled on 2011-07-18
GenBank Submission: KX805140
> BS24758.complete
GAAGTTATCAGTCGACATGCGTGGACTGCAGACAAATCGCCACTCAAGCT
TCCACCACCTGCTCCTCCTTTTCCTGGTCCTCCTGAGATCAGACCGTTGT
TTTGGCATTGTTTGCTACCACTGCGATTCCATTGCCCTGCCGGAATGTTC
CCAGACCCTCGGAGAAGTGGGAGTTCTTCCCTACAAGGAGTGCGCTACCG
AGCTGACGTGTGCCATGTCCATTGTGGACTCCATTACATACCGCGGCTGC
GGAGCAGAAACCCCCATCATCGGAGCGACTTACTCAAAGACTTGCTCAAC
GAACCTGTGCAATGCGGGTGTCTATCCGCCGGGACGACTTAAGTGCCATC
ATTGCGCTGGACAGGAATGCGTGGCAGCTCCAGCATCCAAACCAAAACCC
TGTCGCTATCATTTGGAAGAGGATCAGTGCTACACGGATGTCATAAGTTC
TTCAGATGCCTACAGAGGTTGTACCTCCGAGCAGAATCACACGCTGTCCA
CTTCCGCCCAACTGTGTGAGATCAATGGCTGCAATGAGGAGCAAGGAGCT
TGGACCCAAGTCTGCGCCACCTGCGATTCAGCAATCGGCCGGGGTTGCAA
GATAGATCTCTTTCAGGTCAACACCGGCAGGTGCAATGTTAGCTTATACG
AGGAATGCCAGCAGGATGTTCTGTTGGGTGAGCAAGAGGATAAGTACTGC
TTCAGCTTTCGCAGACTAAGCCGCGTTGTCAGAGGATGTTCTACTAAAAT
TCCAACAGATTTGGAGCCGTATGTAGAGCAATTAGAAAAGTGTAATACCA
GTGACCACTGCAACGCAGGATGCATTACGCAGCAGAAGTGTTTTACATGC
AACTCCGTGGATCAGGAACTTTGCCGGACAAATATTACGGCTATAGCTAA
TAGCACTTGTAGCTCCGCTGAGGCCTCTTCCTGTTTCTCCTGTGAGTACT
CCAACTGGAGTATTCAGCGAGGCTGTGGAGCACCGCCGGAAAATCCTCAA
ATCACCAAGTGCTATGAATGCGATGAAGGCGCTGGGTGTAATAGTAAGGA
TTTCACCCGGTGCTACCAATGCAGCACGGATCAAGCGGGAGCAGGCTGTG
CAAATTGGGAAAGTCCTGGCGAAATCTACATTGAAGAATGCGATGAACCG
GCTGCACCATGTGTGGTTGTTTCCTTTAACAACGCCACCACTGCGAGAGG
TTGCCAAAAATCGGACTTCAGCTGTGCTTCCGCAAATGTGGCCAGTTGTC
GACTATGCGAAGGAAGTTTCTGCAACAAAGGATCATTTCCGGAGGAGCGC
CTCTGGTGTCATCAGTGTAGGGGAGTGCAGGACTGCGAGGAGATCTCCAG
GGGACAAACGGCTATGCCTTGTCCGGCTCGAGCAAATGAGCCGGAGGATC
AAGAATTGGCCTGCTTGGAGTACTTTGACATCAACAGTAAAGAAATTGTA
AGAGGATGTCGTTCCAATCCCGAGCTATACTACGAATGTCTCTTAAGGAG
TAACCACTTCGACAGTTGTCGCACTTGTCACAGTCAGGCATGCAATAATA
GTCCTGGCCGGGAATTAAGAGCCAGCTATGAGCTGGAGGCCAAGGCATTG
TCCTTGTTGCAAGGCAAGAGTTCCGCAATATCCATCAAATTTTCGAATGC
AGGTTACGGAGTTTGGTTGATCTTTAGCGTTATCTATATTGTAACTTGCT
GAAAGCTTTCTAGACCAT
BS24758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15170-RA | 1686 | CG15170-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| CG15170-RB | 1683 | CG15170-PB | 1..1683 | 17..1702 | 8350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15170-RA | 1718 | CG15170-RA | 7..1692 | 17..1702 | 8430 | 100 | Plus |
| CG15170-RB | 1715 | CG15170-RB | 7..1689 | 17..1702 | 8350 | 99.8 | Plus |
| CG15168-RA | 492 | CG15168-RA | 455..492 | 1702..1665 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18988294..18989772 | 1702..224 | 7395 | 100 | Minus |
| 2L | 23513712 | 2L | 18989953..18990087 | 224..90 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 18990155..18990227 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:52:18 has no hits.
BS24758.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:13 Download gff for
BS24758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15170-RA | 7..1691 | 17..1701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:25 Download gff for
BS24758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15170-RA | 7..1691 | 17..1701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:39 Download gff for
BS24758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15170-RA | 7..1691 | 17..1701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:39 Download gff for
BS24758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18988295..18989771 | 225..1701 | 100 | <- | Minus |
| 2L | 18989953..18990087 | 90..224 | 100 | <- | Minus |
| 2L | 18990155..18990227 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:25 Download gff for
BS24758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18988295..18989771 | 225..1701 | 100 | <- | Minus |
| arm_2L | 18989953..18990087 | 90..224 | 100 | <- | Minus |
| arm_2L | 18990155..18990227 | 17..89 | 100 | | Minus |
BS24758.pep Sequence
Translation from 16 to 1701
> BS24758.pep
MRGLQTNRHSSFHHLLLLFLVLLRSDRCFGIVCYHCDSIALPECSQTLGE
VGVLPYKECATELTCAMSIVDSITYRGCGAETPIIGATYSKTCSTNLCNA
GVYPPGRLKCHHCAGQECVAAPASKPKPCRYHLEEDQCYTDVISSSDAYR
GCTSEQNHTLSTSAQLCEINGCNEEQGAWTQVCATCDSAIGRGCKIDLFQ
VNTGRCNVSLYEECQQDVLLGEQEDKYCFSFRRLSRVVRGCSTKIPTDLE
PYVEQLEKCNTSDHCNAGCITQQKCFTCNSVDQELCRTNITAIANSTCSS
AEASSCFSCEYSNWSIQRGCGAPPENPQITKCYECDEGAGCNSKDFTRCY
QCSTDQAGAGCANWESPGEIYIEECDEPAAPCVVVSFNNATTARGCQKSD
FSCASANVASCRLCEGSFCNKGSFPEERLWCHQCRGVQDCEEISRGQTAM
PCPARANEPEDQELACLEYFDINSKEIVRGCRSNPELYYECLLRSNHFDS
CRTCHSQACNNSPGRELRASYELEAKALSLLQGKSSAISIKFSNAGYGVW
LIFSVIYIVTC*
BS24758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15170-PA | 561 | CG15170-PA | 1..561 | 1..561 | 3106 | 100 | Plus |
| CG15170-PB | 560 | CG15170-PB | 1..560 | 1..561 | 3082 | 99.6 | Plus |
| CG15773-PA | 478 | CG15773-PA | 33..442 | 33..420 | 431 | 31.7 | Plus |
| CG15773-PB | 319 | CG15773-PB | 33..317 | 33..310 | 312 | 33.3 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 763..1365 | 21..512 | 263 | 22 | Plus |
