BS24764.complete Sequence
557 bp assembled on 2011-06-17
GenBank Submission: KX801237
> BS24764.complete
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTTCTGC
AATCGGCACGTGAACAACTCAAATGGTCCATTCTGAAGTGAAAGCTTTCT
AGACCAT
BS24764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaCOP-RA | 525 | CG3948-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
| zetaCOP-RC | 492 | CG3948-PC | 1..492 | 50..541 | 2460 | 100 | Plus |
| zetaCOP-RB | 510 | CG3948-PB | 1..479 | 17..495 | 2395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaCOP-RA | 694 | CG3948-RA | 39..563 | 17..541 | 2625 | 100 | Plus |
| zetaCOP-RC | 671 | CG3948-RC | 34..540 | 35..541 | 2535 | 100 | Plus |
| zetaCOP-RB | 1030 | CG3948-RB | 39..517 | 17..495 | 2395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16673057..16673425 | 402..34 | 1845 | 100 | Minus |
| 3L | 28110227 | 3L | 16672452..16672545 | 495..402 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 16671795..16671844 | 541..492 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:49 has no hits.
BS24764.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:31 Download gff for
BS24764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RA | 39..562 | 17..540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:28 Download gff for
BS24764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RA | 39..562 | 17..540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:05 Download gff for
BS24764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaCOP-RA | 39..562 | 17..540 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:05 Download gff for
BS24764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16671796..16671842 | 494..540 | 100 | <- | Minus |
| 3L | 16672454..16672544 | 403..493 | 100 | <- | Minus |
| 3L | 16673057..16673424 | 35..402 | 100 | <- | Minus |
| 3L | 16673482..16673499 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:28 Download gff for
BS24764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16664896..16664942 | 494..540 | 100 | <- | Minus |
| arm_3L | 16665554..16665644 | 403..493 | 100 | <- | Minus |
| arm_3L | 16666157..16666524 | 35..402 | 100 | <- | Minus |
| arm_3L | 16666582..16666599 | 17..34 | 100 | | Minus |
BS24764.pep Sequence
Translation from 16 to 540
> BS24764.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVLQSAREQLKWSILK*
BS24764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaCOP-PA | 174 | CG3948-PA | 1..174 | 1..174 | 882 | 100 | Plus |
| zetaCOP-PC | 163 | CG3948-PC | 1..163 | 12..174 | 824 | 100 | Plus |
| zetaCOP-PB | 169 | CG3948-PB | 1..160 | 1..160 | 813 | 100 | Plus |
