BS24765.complete Sequence
500 bp assembled on 2011-06-17
GenBank Submission: KX804941
> BS24765.complete
GAAGTTATCAGTCGACATGGTTCGAAAAGTGCTAATGATTTGTTTGGGCA
ACATCTGCAGGTCCCCAATTGCGGAGGTCGTGATGGTGGACACCCTGGAG
AAGGCGAATGTCAAGGACGTGGAGGTCGATAGTGCAGCAATTGGTGGCTG
GCACGTGGGCAACCGCGCAGATCCGCGGGCCATCAGCACGCTGCAAAAGC
ACGGCCTCAAGTGCACCCACATCGTTCGGCAGATCCGCAAGCAGGACTTC
TCGGAATTCGACTACATCTTCGGCATGGACGAGGACAACATGAGCGAGCT
AAGGCGTCTGGCGCCCAAGGGCTCCAAGGCGGAGCTCCTCATGCTGGGCG
ATTTCGGACTTGAGAAGAAGAACCGCATCATTGAGGATCCCTACTATGAG
CGTGGAGCCGAGGGCTTTGAGACCGCCTATCAGCAGTGCGTGGTTGCCTG
TGCCGCCTTCATGAAAGAGCGCCTCCAGAAATGAAAGCTTTCTAGACCAT
BS24765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| primo-1-RB | 468 | CG33748-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
| primo-1-RA | 468 | CG33748-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| primo-1-RB | 588 | CG33748-RB | 71..539 | 17..485 | 2345 | 100 | Plus |
| primo-1-RA | 1336 | CG33748-RA | 819..1287 | 17..485 | 2345 | 100 | Plus |
| primo-2-RC | 1336 | CG33747-RC | 819..1287 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13710308..13710659 | 398..47 | 1760 | 100 | Minus |
| 3R | 32079331 | 3R | 13710066..13710153 | 485..398 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1053..1120 | 161..228 | 105 | 65.2 | Plus |
BS24765.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:32 Download gff for
BS24765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 819..1285 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:33 Download gff for
BS24765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-1-RA | 819..1285 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:08 Download gff for
BS24765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| primo-2-RC | 819..1285 | 17..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:08 Download gff for
BS24765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13710068..13710153 | 398..483 | 100 | <- | Minus |
| 3R | 13710309..13710658 | 48..397 | 100 | <- | Minus |
| 3R | 13710723..13710753 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:33 Download gff for
BS24765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9535790..9535875 | 398..483 | 100 | <- | Minus |
| arm_3R | 9536031..9536380 | 48..397 | 100 | <- | Minus |
| arm_3R | 9536445..9536475 | 17..47 | 100 | | Minus |
BS24765.pep Sequence
Translation from 16 to 483
> BS24765.pep
MVRKVLMICLGNICRSPIAEVVMVDTLEKANVKDVEVDSAAIGGWHVGNR
ADPRAISTLQKHGLKCTHIVRQIRKQDFSEFDYIFGMDEDNMSELRRLAP
KGSKAELLMLGDFGLEKKNRIIEDPYYERGAEGFETAYQQCVVACAAFMK
ERLQK*
BS24765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| primo-1-PB | 155 | CG33748-PB | 1..155 | 1..155 | 805 | 100 | Plus |
| primo-1-PA | 155 | CG33748-PA | 1..155 | 1..155 | 805 | 100 | Plus |
| primo-2-PC | 164 | CG33747-PC | 10..157 | 5..151 | 397 | 50 | Plus |
| CG31469-PA | 164 | CG31469-PA | 2..151 | 4..150 | 318 | 41.3 | Plus |
| CG14297-PA | 250 | CG14297-PA | 4..148 | 3..145 | 227 | 34.9 | Plus |
