BS24778.complete Sequence
1214 bp assembled on 2011-06-22
GenBank Submission: KX805664
> BS24778.complete
GAAGTTATCAGTCGACATGAATATACGTGTGATTATCCTACTTTTCTGTC
TGATTGTGTTTGTAGGCGGTAAGAAAGTACACAGATTTCGACTGGAGAGA
CGATCCCACCGTCACCACAAGATTCCTCACGCCCATCTGCACCTGCAGTT
TCGGAATGCGCTGCGAAGGAAGTACGGATTTACTCCACTCCGTACGGTGA
ATGCTGTGAATGTGACCAGCGAGTCCGGTAAGGGAGTCGTGATAACCGAG
CCCCTGATAAATTCCTACGATACCAACTTTTTCGGGGTTGTGTCGGTCGG
AGATCAATCATTCACCATGCAATTCGACACGGGTTCCTCGGACTTTTGGG
TGCCCAGTTCCCATTGCAGATTCTGCATCAAAACGTGCGGGAACAAGTTT
TTCCGGAAGTCCAATTCCAAATCCTTTCGGTCAAGTGGAACTCCATTTAG
CATCACCTACGGATCGGGCTCCGTGAAGGGAATCGTGGCCTCGGATAATG
TTGGCTTCGGCGATCTAAAGATCCAGAACCAAGGCATTGGATTGGTCAAC
ATATCGGACTCCTGCTCCGTTTTCGATGGAATCGCTGGCTTCGCCTTTCA
GCAACTCTCTATGACCAAATCGGTCCCTTCTTTCCAGCAAATGATTGACC
AACAGTTGGTGGAGCAGCCAATTTTCTCGTTTCATCTGAAAAGTGGGTCC
AGTGATGGGGGCTCCATGATACTCGGTGGATCGAACTCGAGTCTGTACTA
CGGTCCGTTGACCTATACAAATGTGACCGAGGCCAAGTACTGGAGCTTCA
AGCTGGACTTCATAGCGGTCCATGGCAAGGGTTCCAGGAGCTCCCGCACG
GGGAACAAGGCCATCATGGACACGGGAACCTCCCTGATCGTTGGTCCTGT
CCTGGAAGTCCTCTACATCAACAAGGACATCGGAGCCGAGCACAATAAAA
CCTATAACCTGTACACCGTCGCCTGTGAATCGATTCCCCAACTTCCGATC
ATCGTCTTTGGCATTGCTGGCAAGGAGTTCTTCGTGAAGCCACATACCTA
CGTCATCAGGTACGATAATTTTTGCTTCTCCGCCTTCATGGACATGCTAG
GCCTGCAGTACTGGATACTCGGTGATGCCTTCATGCGGGAGAACTATGTG
GAGTTCGATTGGGCTAGGAGAAGAATGGGCATAGCACCGGCTGTATGAAA
GCTTTCTAGACCAT
BS24778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31661-RA | 1182 | CG31661-PA | 1..1182 | 17..1198 | 5895 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31661-RA | 1341 | CG31661-RA | 11..1193 | 16..1198 | 5900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1497253..1498435 | 16..1198 | 5900 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:40:32 has no hits.
BS24778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-22 09:46:30 Download gff for
BS24778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31661-RA | 1..1181 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:10 Download gff for
BS24778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31661-RA | 12..1192 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:00 Download gff for
BS24778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31661-RA | 12..1192 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:00 Download gff for
BS24778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1497254..1498434 | 17..1197 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:10 Download gff for
BS24778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1497254..1498434 | 17..1197 | 99 | | Plus |
BS24778.pep Sequence
Translation from 16 to 1197
> BS24778.pep
MNIRVIILLFCLIVFVGGKKVHRFRLERRSHRHHKIPHAHLHLQFRNALR
RKYGFTPLRTVNAVNVTSESGKGVVITEPLINSYDTNFFGVVSVGDQSFT
MQFDTGSSDFWVPSSHCRFCIKTCGNKFFRKSNSKSFRSSGTPFSITYGS
GSVKGIVASDNVGFGDLKIQNQGIGLVNISDSCSVFDGIAGFAFQQLSMT
KSVPSFQQMIDQQLVEQPIFSFHLKSGSSDGGSMILGGSNSSLYYGPLTY
TNVTEAKYWSFKLDFIAVHGKGSRSSRTGNKAIMDTGTSLIVGPVLEVLY
INKDIGAEHNKTYNLYTVACESIPQLPIIVFGIAGKEFFVKPHTYVIRYD
NFCFSAFMDMLGLQYWILGDAFMRENYVEFDWARRRMGIAPAV*
BS24778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31661-PA | 393 | CG31661-PA | 1..393 | 1..393 | 2068 | 100 | Plus |
| pcl-PA | 407 | CG13374-PA | 6..378 | 3..391 | 551 | 36.4 | Plus |
| CG5863-PA | 395 | CG5863-PA | 43..394 | 42..392 | 549 | 38.1 | Plus |
| Bace-PB | 372 | CG13095-PB | 41..370 | 46..391 | 519 | 36 | Plus |
| Bace-PA | 372 | CG13095-PA | 41..370 | 46..391 | 519 | 36 | Plus |
