BS24782.complete Sequence
1064 bp assembled on 2011-06-21
GenBank Submission: KX806141
> BS24782.complete
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGTACCCCTCG
GTCGAGAAAGTAACTCGTGTGTACAAGTCGAGTTACCCCATCTACTCGAG
CTACTCGGTGCCACGCCGCGTCTACGGCGCAACCCGGGTGGTGACCTCGC
CCATCCGCGTGGTAACCTCGCCTGCCCGCGTGGTGTCCCGCGTCATACAC
TCACCATCGCCTGTTCGCGTTGTCCGCACGACGACCCGAGTGATTTCATC
GCCGGAGCGCACCACCTACTCCTACACCACGCCATCGACCTACTACAGCC
CCTCCTACTTGCCATCGACCTACACTTCGACCTACATCCCGACATCGTAC
ACCACGTACACGCCGTCCTACGCCTACAGCCCGACCACGGTCACCCGGGT
GTATGCCCCACGCAGTTCGCTGTCGCCGCTGAGGATCACCCCCTCGCCGG
TGAGGGTCATCACCAGCCCGGTTCGCTCTGTGCCCTCCTATCTGAAGAGG
CTGCCGCCTGGTTACGGTGCCCGCGCCCTGACCAATTACCTCAATACCGA
ACCCTTTACCACCTTCTCCGAGGAAACAAGCCGGATTCGCAACCGCGCGC
AATCTCTGATTCGTGACTTGCACACTCCCGTGGTGCGCCGTGCACGTAGC
TGCACTCCCTTTCCCGTCACTGGTTACACCTATGAGCCGGCCTCGCAACT
GGCCCTAGATGCCTATGTGGCCCGTGTCACAAATCCTGTCCGTCATATTG
CCAAGGAAGTTCACAATATTTCGCACTACCCCAGGCCAGCAGTGAAATAT
GTTGGTAAAAGTCATCTTGCATCAGTAAGGATTTGCGGTGACAAGGCCTA
TAATGTTAGAAGTCCGTTGTACGATACGGACAAAGTTCGAACTGATATTA
ACCTCTTGTCCTGGTACCTTAGACACCCGACTTGGAAGAATGATAAGAAA
TCCCAAGATCCTGTGAAGGAAGTTGAAGCTGTTGAAGTTGAGGCCTAAAA
GCTTTCTAGACCAT
BS24782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45076-RI | 1032 | CG45076-PI | 1..1032 | 17..1048 | 5160 | 100 | Plus |
| CG45076-RE | 1032 | CG45076-PE | 1..1032 | 17..1048 | 5160 | 100 | Plus |
| CG45076-RH | 1860 | CG45076-PH | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45076-RI | 2109 | CG45076-RI | 122..1156 | 15..1049 | 5175 | 100 | Plus |
| CG45076-RE | 1215 | CG45076-RE | 122..1156 | 15..1049 | 5175 | 100 | Plus |
| CG45076-RH | 2199 | CG45076-RH | 122..961 | 15..854 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10772113..10772604 | 610..119 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 10771038..10771206 | 1022..854 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 10771333..10771468 | 858..723 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 10771860..10771972 | 723..611 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 10777177..10777253 | 91..15 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:30:38 has no hits.
BS24782.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 17:07:43 Download gff for
BS24782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RE | 118..1147 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:03 Download gff for
BS24782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RE | 124..1153 | 17..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:34 Download gff for
BS24782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45076-RE | 124..1153 | 17..1046 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:34 Download gff for
BS24782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10771038..10771205 | 855..1022 | 100 | <- | Minus |
| 3R | 10771337..10771467 | 724..854 | 100 | <- | Minus |
| 3R | 10771860..10771972 | 611..723 | 100 | <- | Minus |
| 3R | 10770409..10770432 | 1023..1046 | 100 | <- | Minus |
| 3R | 10772113..10772604 | 119..610 | 100 | <- | Minus |
| 3R | 10773135..10773161 | 92..118 | 100 | <- | Minus |
| 3R | 10777177..10777251 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:03 Download gff for
BS24782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6597059..6597189 | 724..854 | 100 | <- | Minus |
| arm_3R | 6597582..6597694 | 611..723 | 100 | <- | Minus |
| arm_3R | 6596131..6596154 | 1023..1046 | 100 | <- | Minus |
| arm_3R | 6596760..6596927 | 855..1022 | 100 | <- | Minus |
| arm_3R | 6597835..6598326 | 119..610 | 100 | <- | Minus |
| arm_3R | 6598857..6598883 | 92..118 | 100 | <- | Minus |
| arm_3R | 6602899..6602973 | 17..91 | 100 | | Minus |
BS24782.pep Sequence
Translation from 16 to 1047
> BS24782.pep
MVYESGFTTRRTYSSRPVTTSYAVTYPSVEKVTRVYKSSYPIYSSYSVPR
RVYGATRVVTSPIRVVTSPARVVSRVIHSPSPVRVVRTTTRVISSPERTT
YSYTTPSTYYSPSYLPSTYTSTYIPTSYTTYTPSYAYSPTTVTRVYAPRS
SLSPLRITPSPVRVITSPVRSVPSYLKRLPPGYGARALTNYLNTEPFTTF
SEETSRIRNRAQSLIRDLHTPVVRRARSCTPFPVTGYTYEPASQLALDAY
VARVTNPVRHIAKEVHNISHYPRPAVKYVGKSHLASVRICGDKAYNVRSP
LYDTDKVRTDINLLSWYLRHPTWKNDKKSQDPVKEVEAVEVEA*
BS24782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45076-PI | 343 | CG45076-PI | 1..343 | 1..343 | 1782 | 100 | Plus |
| CG45076-PE | 343 | CG45076-PE | 1..343 | 1..343 | 1782 | 100 | Plus |
| CG45076-PH | 619 | CG45076-PH | 1..279 | 1..279 | 1440 | 100 | Plus |
| CG45076-PA | 619 | CG45076-PA | 1..279 | 1..279 | 1440 | 100 | Plus |
