Clone BS24785 Report

Search the DGRC for BS24785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:247
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG34245-RD
Protein status:BS24785.pep: full length peptide match
Sequenced Size:428

Clone Sequence Records

BS24785.complete Sequence

428 bp assembled on 2011-06-17

GenBank Submission: KX806178

> BS24785.complete
GAAGTTATCAGTCGACATGAATGAATCCACACCAAGTAACTGCAGCACAC
GAAACACACAAATACCAATTCGAGCGGTTCTCAGACAGACCAGGGAAAGT
TTAACTGAGATCTTTACCAAGTATCGCCAAAAAGTGGGCAATGGAGCTCT
CCTGGCGGTTCAAAGGGTCAAAACTTCTCAACAATTAAGTCTTATAAAGC
CAAGCCTTCGTTGTGTAACCAAACGACAGAGTTTCTTTAAACGATATGGA
TGCGAAGAGGTGGCCACTGTGTGCCTTTTGGTGGTCATTTTGTTGATGCT
CTTGTTTGGACTTTACCTGGCCAGGAACTACAATCACGCCTATATCTATG
GCTCTGGTGGATGCCTTTCGACGTTTTTGTGGACATACGATGAATGCCAA
ATAATTACATAGAAGCTTTCTAGACCAT

BS24785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG34245-RD 396 CG34245-PD 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG34245-RD 560 CG34245-RD 91..486 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14894112..14894326 231..17 1075 100 Minus
3L 28110227 3L 14893808..14893990 412..230 915 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:48:07 has no hits.

BS24785.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:36 Download gff for BS24785.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 91..486 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:57 Download gff for BS24785.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 91..486 17..412 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:29 Download gff for BS24785.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 91..486 17..412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:29 Download gff for BS24785.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14893808..14893988 232..412 100 <- Minus
3L 14894112..14894326 17..231 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:57 Download gff for BS24785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14886908..14887088 232..412 100 <- Minus
arm_3L 14887212..14887426 17..231 100   Minus

BS24785.pep Sequence

Translation from 16 to 411

> BS24785.pep
MNESTPSNCSTRNTQIPIRAVLRQTRESLTEIFTKYRQKVGNGALLAVQR
VKTSQQLSLIKPSLRCVTKRQSFFKRYGCEEVATVCLLVVILLMLLFGLY
LARNYNHAYIYGSGGCLSTFLWTYDECQIIT*

BS24785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG34245-PD 131 CG34245-PD 1..131 1..131 677 100 Plus