BS24787.complete Sequence
602 bp assembled on 2011-06-17
GenBank Submission: KX803373
> BS24787.complete
GAAGTTATCAGTCGACATGGGCAACAAAGTTGTGACATTTACGGAACAGG
AATTGGATGACTACCAGGATTGCACGTTCTTCACGCGCAAGGAGATCCTG
CGGGTTCACAAGCGATTCCGTGAGCTGCGGCCGGATCTGGTGCCTCGCCA
AATGACCGAAGGTCAGGCCTCCAGTGTTAAGGTGCCCTGCGAATGCATTG
AGAAGATGCCCGAGTTGCGTGAGAATCCCTTTCGCCGGCGAATATGCGAG
GCCTTCTCACGCGATGGCCAGGGCAATTTATCCTTTGAGGACTTTCTGGA
CGCCCTCTCCGTTTTTAGCGAGCAGGCGCCGAGGGACATTAAAGTTTTCT
ACGCTTTCAAAATTTATGATTTCGATCAGGACGGCTTCATCGGGCACGCC
GACCTCATGTCCTGCCTGACAACAATGACCAAGAACGAGCTGAGTCCGGA
GGAGCACCAGCAGATTGCCGACAAGGTAATCGAGGAGGCCGACGTCGATG
GCGATGGCAAGTTATCAATTTTGGAGTTCGAGCACGTTATACTCCGGGCG
CCCGACTTTCTATCCACCTTTCACATCAGAATATGAAAGCTTTCTAGACC
AT
BS24787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cib2-RB | 570 | CG9236-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cib2-RB | 947 | CG9236-RB | 120..691 | 17..588 | 2860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20882187..20882407 | 368..588 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 20880760..20880904 | 102..246 | 725 | 100 | Plus |
2R | 25286936 | 2R | 20881028..20881150 | 246..368 | 615 | 100 | Plus |
2R | 25286936 | 2R | 20880049..20880100 | 17..68 | 260 | 100 | Plus |
2R | 25286936 | 2R | 20880176..20880213 | 66..103 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:48:17 has no hits.
BS24787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:37 Download gff for
BS24787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9236-RB | 120..688 | 17..585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:01 Download gff for
BS24787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cib2-RB | 120..688 | 17..585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:32 Download gff for
BS24787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cib2-RB | 120..688 | 17..585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:32 Download gff for
BS24787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20880049..20880099 | 17..67 | 100 | -> | Plus |
2R | 20880178..20880212 | 68..102 | 100 | -> | Plus |
2R | 20880761..20880903 | 103..245 | 100 | -> | Plus |
2R | 20881028..20881150 | 246..368 | 100 | -> | Plus |
2R | 20882188..20882404 | 369..585 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:01 Download gff for
BS24787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16767554..16767604 | 17..67 | 100 | -> | Plus |
arm_2R | 16767683..16767717 | 68..102 | 100 | -> | Plus |
arm_2R | 16768266..16768408 | 103..245 | 100 | -> | Plus |
arm_2R | 16768533..16768655 | 246..368 | 100 | -> | Plus |
arm_2R | 16769693..16769909 | 369..585 | 100 | | Plus |
BS24787.pep Sequence
Translation from 16 to 585
> BS24787.pep
MGNKVVTFTEQELDDYQDCTFFTRKEILRVHKRFRELRPDLVPRQMTEGQ
ASSVKVPCECIEKMPELRENPFRRRICEAFSRDGQGNLSFEDFLDALSVF
SEQAPRDIKVFYAFKIYDFDQDGFIGHADLMSCLTTMTKNELSPEEHQQI
ADKVIEEADVDGDGKLSILEFEHVILRAPDFLSTFHIRI*
BS24787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cib2-PB | 189 | CG9236-PB | 1..189 | 1..189 | 990 | 100 | Plus |
CanB2-PB | 170 | CG11217-PB | 12..157 | 19..175 | 256 | 36.9 | Plus |
CanB2-PA | 170 | CG11217-PA | 12..157 | 19..175 | 256 | 36.9 | Plus |
CanB-PB | 170 | CG4209-PB | 12..157 | 19..175 | 254 | 36.9 | Plus |
CanB-PA | 170 | CG4209-PA | 12..157 | 19..175 | 254 | 36.9 | Plus |