BS24790.complete Sequence
950 bp assembled on 2011-06-21
GenBank Submission: KX806239
> BS24790.complete
GAAGTTATCAGTCGACATGAAGTTCATCGCAGCTGGATTAGCTCTTCTGG
TCTGCTCCATCCAGTTGGGTGAAGGAGCACCTGGTCACCTGCTAGACTCC
AGTTGTGGCACGACAAAACCAGAATTTATCCCAATGATCACCGGGGGCGC
AGACGCAGGCCTATTCTCAAATCCATGGATGGTGAAGGTGCTAGGCGAGA
AACTATGTGGTGGCTCGCTAATCACCAGTCGCTTCGTTCTCACGGCCGCC
CATTGCATCGTTAGTACACACATGAGAGTACGCTTGGGCGAGTATAAAAC
CCGCTTTCCTGGCAAGGATTGCTCGCGCTGCGTGCCCAAGTCATATAAAC
TCAGGAGAATACGCTTGGGCGAGTATGACACCCGCTTTCCTGGCAAGGAT
TGCTGCGTGCCCAAGTCATATGAACTCGCTGTGGATAGAAAGATTTTGCA
TGCGGATTATAACCTAAACTTGGACAACGACATCGGCCTGTTGCGCATGA
AGAGCTTCGTCCAGTACTCAGACTACGTCCGGCCGATCTGTCTCCTGGTC
GAGGGACACATGGCGGAAAGTCCCATCTTCAACATCACCGGCTGGGGTGT
CACCAACGATGGCACGCCCAGCCGGAGGCTCCAGAGGGCCACTGTGTACA
ACACCGACCTCCACTTCTGCCGAAGCAAGTTCACCAAGCAGGTGGATGAG
TCGCAGATTTGTGCTGCTGGCACAAATAGCGATGCATGCCACGGCGACTC
GGGAGGCCCGCTGAGCGCACAGGTTCCTTTTGCCGGCAGCTGGCTGACCT
TCCAGTACGGACTGGTCAGCTACGGGTCGGCGGCATGCCATTCCTTCTCC
GTTTACACCAACGTTACGCACCACAGGGACTGGATTGTGAACGCCATCGA
AGACTTCAGCAGAGCTTTCCAGCTTAGACTCTAGAAGCTTTCTAGACCAT
BS24790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30414-RC | 918 | CG30414-PC | 1..918 | 17..934 | 4590 | 100 | Plus |
| CG30414-RB | 918 | CG30414-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
| CG30414-RC | 918 | CG30414-PC | 258..336 | 355..427 | 210 | 87.3 | Plus |
| CG30414-RC | 918 | CG30414-PC | 339..411 | 274..352 | 210 | 87.3 | Plus |
| CG30414-RB | 918 | CG30414-PB | 258..336 | 355..427 | 210 | 87.3 | Plus |
| CG30414-RB | 918 | CG30414-PB | 339..411 | 274..352 | 210 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30414-RC | 975 | CG30414-RC | 24..941 | 17..934 | 4590 | 100 | Plus |
| CG30414-RB | 1094 | CG30414-RB | 143..1060 | 17..934 | 4590 | 100 | Plus |
| CG30414-RC | 975 | CG30414-RC | 281..359 | 355..427 | 210 | 87.3 | Plus |
| CG30414-RC | 975 | CG30414-RC | 362..434 | 274..352 | 210 | 87.3 | Plus |
| CG30414-RB | 1094 | CG30414-RB | 400..478 | 355..427 | 210 | 87.3 | Plus |
| CG30414-RB | 1094 | CG30414-RB | 481..553 | 274..352 | 210 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23384234..23384650 | 934..518 | 2085 | 100 | Minus |
| 2R | 25286936 | 2R | 23384702..23384954 | 521..269 | 1250 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23385112..23385326 | 231..17 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 23384871..23384952 | 427..352 | 225 | 87.8 | Minus |
| 2R | 25286936 | 2R | 23385004..23385047 | 274..231 | 220 | 100 | Minus |
| 2R | 25286936 | 2R | 23384796..23384868 | 352..274 | 210 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:12 has no hits.
BS24790.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 16:50:21 Download gff for
BS24790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30414-RB | 130..1047 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:19 Download gff for
BS24790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30414-RB | 143..1060 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:43 Download gff for
BS24790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30414-RB | 143..1060 | 17..934 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:43 Download gff for
BS24790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23384234..23384646 | 522..934 | 100 | <- | Minus |
| 2R | 23384702..23384949 | 274..521 | 100 | <- | Minus |
| 2R | 23385005..23385047 | 231..273 | 100 | <- | Minus |
| 2R | 23385113..23385326 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:19 Download gff for
BS24790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19271757..19272169 | 522..934 | 100 | <- | Minus |
| arm_2R | 19272225..19272472 | 274..521 | 100 | <- | Minus |
| arm_2R | 19272528..19272570 | 231..273 | 100 | <- | Minus |
| arm_2R | 19272636..19272849 | 17..230 | 100 | | Minus |
BS24790.pep Sequence
Translation from 16 to 933
> BS24790.pep
MKFIAAGLALLVCSIQLGEGAPGHLLDSSCGTTKPEFIPMITGGADAGLF
SNPWMVKVLGEKLCGGSLITSRFVLTAAHCIVSTHMRVRLGEYKTRFPGK
DCSRCVPKSYKLRRIRLGEYDTRFPGKDCCVPKSYELAVDRKILHADYNL
NLDNDIGLLRMKSFVQYSDYVRPICLLVEGHMAESPIFNITGWGVTNDGT
PSRRLQRATVYNTDLHFCRSKFTKQVDESQICAAGTNSDACHGDSGGPLS
AQVPFAGSWLTFQYGLVSYGSAACHSFSVYTNVTHHRDWIVNAIEDFSRA
FQLRL*
BS24790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30414-PC | 305 | CG30414-PC | 1..305 | 1..305 | 1638 | 100 | Plus |
| CG30414-PB | 305 | CG30414-PB | 1..305 | 1..305 | 1638 | 100 | Plus |
| CG30289-PA | 316 | CG30289-PA | 1..278 | 1..297 | 656 | 46.2 | Plus |
| CG30288-PC | 282 | CG30288-PC | 24..282 | 23..302 | 559 | 44 | Plus |
| CG33225-PB | 292 | CG33225-PB | 11..278 | 8..294 | 490 | 39.5 | Plus |
