BS24820.complete Sequence
1397 bp assembled on 2011-06-23
GenBank Submission: KX801124
> BS24820.complete
GAAGTTATCAGTCGACATGAAAGTACTGATCACGTTCTTCTTTCTGGGCG
CCTGCCTCTGCGGCATCCAAGCGGATGAGAGCATCGCTGACCTCTTGAAG
GACAATGCGAAGGGCGTACAGGCAGCCAATGTGCTCCTGACCCGGATTGC
CCAAGTAAGCGAGCAGACTCAGGTCGGTTTGGCAGAGCAAAAGGAGGCAC
TGAAGGCCCTGACGCTCGTGGAGAAGCTGCTAGCCAAGTTGACTGTCGTT
CTGGAGGTTGGCTCCCACAATCTGGTGGCCACCCTTGAGAACCTCTCTAG
GCAGGGCGAGGAATACGGCAATCGAACGGAGTCAGAGCTCCTGGAATTGG
TGCGTCTGCAGGAGGGCACCAAGGAGATACTCAATGTCCTGGAGGCCAAG
CTGGATGCCTATCAGAGGCACGTGCTCCATAGTTCCCGCAACATTGACAA
CAGCATCGACGGACTGGCCAAACTTATTACTAGGACGGTGTTGCCACAAT
TGAATGGGCTAAAGTGTACCTTCGATAGCTTGGAGACGTCCCAAATCAAC
GTGGAGGTGGAGCTGAAGAACTTGGCCGGAGTCAAGGAGCTCAGCGAGAA
CTCCAACTTCAAGCTGAACGTGCTGGAGCATCAATTGAAGCAGCTGAATC
GCACTCAGGAGCAGCGCTTGGACATCCTAATCGATGCAGTCAAGCATTTG
CAGCCCCACAGTTCCTGGAAAGTGGAGGCTGTTCTCCGCGAACTGATCAT
CTCGCAGAAACGCATCGAACTGGGTCTGGAAGAGTGCAGCCGACAACAGC
CCTATCCGCAATATGGCCATCACGACGAGTCCTATCTTCCCACCTACGGA
GCTGAGGTCCCAGAGCCGCAGCATGCTCATCCTAAGCCCAAGCAAGTGGA
TCTGGAACAGGTGTGGAGCATCAAGGAGGAGCCTAAGCACGGAGAGCACT
CTGGAAACCACAAAGCTACCGCCTATGCCCAGTCCCCCGAGCCAAAGAAG
AACTATCAGAGCTCCAGCGCCGTGTCCTGGCGGCAGACGGTGCCGTGGGA
GTACGGATCCCCATACCAGTCCGCTCCAGTTCACCACCATCAGCCATGGA
ACCCAGCTCCGGCCCACGTTCCCACCTCCGTTACCAAGCCCAAGCCGTGC
CCCAAGAAAGAGCACCCTACTCCGGCATCCTATGTTCCTTTGCCACATGA
CCAGCCTGAATCCTACAAGCTTCCTGTGGATTACAGTCCCAAACCTAACC
ACGAGCAACCTCATAAGCCCCACCACGAGCCACAGTCTTACAATGAGGAG
ATCTACAAGCCACAGCCCATCCAGCCAGGAGAATCCTTCAGGATTTGGTA
TGGAGACAGTTCCCTCCCCCAAGGATACTAAAAGCTTTCTAGACCAT
BS24820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13084-RA | 1365 | CG13084-PA | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13084-RA | 1544 | CG13084-RA | 36..1409 | 9..1382 | 6825 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19484965..19485898 | 9..942 | 4625 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19485956..19486397 | 941..1382 | 2210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:52:29 has no hits.
BS24820.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-23 17:14:18 Download gff for
BS24820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13084-RA | 44..1406 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:53 Download gff for
BS24820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13084-RA | 44..1406 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:01 Download gff for
BS24820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13084-RA | 44..1406 | 17..1379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:01 Download gff for
BS24820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19484973..19485897 | 17..941 | 99 | -> | Plus |
| 2L | 19485957..19486394 | 942..1379 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:53 Download gff for
BS24820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19484973..19485897 | 17..941 | 99 | -> | Plus |
| arm_2L | 19485957..19486394 | 942..1379 | 100 | | Plus |
BS24820.pep Sequence
Translation from 16 to 1380
> BS24820.pep
MKVLITFFFLGACLCGIQADESIADLLKDNAKGVQAANVLLTRIAQVSEQ
TQVGLAEQKEALKALTLVEKLLAKLTVVLEVGSHNLVATLENLSRQGEEY
GNRTESELLELVRLQEGTKEILNVLEAKLDAYQRHVLHSSRNIDNSIDGL
AKLITRTVLPQLNGLKCTFDSLETSQINVEVELKNLAGVKELSENSNFKL
NVLEHQLKQLNRTQEQRLDILIDAVKHLQPHSSWKVEAVLRELIISQKRI
ELGLEECSRQQPYPQYGHHDESYLPTYGAEVPEPQHAHPKPKQVDLEQVW
SIKEEPKHGEHSGNHKATAYAQSPEPKKNYQSSSAVSWRQTVPWEYGSPY
QSAPVHHHQPWNPAPAHVPTSVTKPKPCPKKEHPTPASYVPLPHDQPESY
KLPVDYSPKPNHEQPHKPHHEPQSYNEEIYKPQPIQPGESFRIWYGDSSL
PQGY*
BS24820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13084-PA | 454 | CG13084-PA | 1..454 | 1..454 | 2401 | 100 | Plus |
| CG4066-PA | 588 | CG4066-PA | 299..533 | 20..254 | 268 | 29.8 | Plus |
| CG13083-PB | 316 | CG13083-PB | 1..306 | 1..308 | 212 | 22.7 | Plus |
