BS24913.complete Sequence
1394 bp assembled on 2011-06-28
GenBank Submission: KX803014
> BS24913.complete
GAAGTTATCAGTCGACATGATGGAATCCGAGGTAGATTCTGAGCGAACCA
TGCTAAAGCGCGAGATCGCCGAGCTGCGCGCAGCGCTCAACCAGAAGGAG
CAGTGTCTGCGAGAATTGGATTCCTTGTTTTCCTTCGCCACAAGGCCAGA
GCAGGAGGTCGTCGGAAATGATCTGGAATCGCCTGATGTTGCAGTCCACA
CGAAGTTGACCAACGACGATATTGCGCGTTACAGCCGCCAGCTTATACTG
CCCGACTTCGGCGTCCAGGGACAATTAAAGCTGAAAAACAGCTCTGTCCT
GATTGTGGGCCTAGGCGGATTGGGATGTCCGGCGGCGCAATACTTGGCGG
CAGCCGGATGCGGACACTTGGGGCTTGTCGACTACGACGAGGTGGAGCGG
AGCAACTTTCACCGCCAGATTCTGCACTCCGAGGACCGTTGTGGTATGTC
CAAGGCTGAATCGGCGAGGATAGCACTGCTCGAACTGAATCCGCACTGCG
AGATTCAGTGCCATTCCAGGATGCTGTACCCTCATAACGCCATGCACATC
ATCCGAGGCTACGACGTGGTTTTGGACTGCACCGATAATGTGCCCACCCG
TTATCTACTCAGCGATGCCTGCGTCATGCTGAGCAAACCCCTTGTCTCCG
GGAGTGCCCTAAAGATGGATGGTCAGCTGACTGTATACAACTATGCCAAC
GGGCCCTGCTACAGGTGTATCTTCCCAGTTCCTCCACCGCCAGAAGCAGT
CACCAATTGCGGAGATGGCGGAGTCCTGGGTGCTGTCACCGGTACAATTG
GCGCAATGCAGGCTCTGGAGGCCATCAAGGTGATTGTGGGAATGGGAGAT
GTCCTCGCCGGACGCCTTCTAATCTTCGATGGCGGTAGCGGCGTGTTTCG
CAATATTCGCATACGCAGCAAGCGACCCAACTGCCATATGTGTTCCGCTC
AGCCGCTGATCACGGAGCTAATCAACTACGAAATGTTCTGCGGTATGCAT
GCAACCGACAAGAACAATCCCATGCTACTTTTGTCGACGGATGAGCGTTT
GTCCGTGGAGGACTACCAACAGAAGATCCAGGCTCAACCACATTTGCTTA
TCGATGTGCGGCCAACTGCAGAATTCGAGATTTGCCAGCTGCCCGAGGCT
GTGAATGTGCCACTGGTAGAGATCCTCGACGACAGCTATCTTAAGCGGCT
TGGCAAGCAATTGGAGGACAAGGAACTGCCCATCGTACTGGTCTGCCGTC
GGGGTAATGATTCGCAGATCGCCGTTCAGCATTTGCGCAACCGATTCCCC
ACGCATTTCGTTCGAGACCTGATTGGCGGACTGCATGCCTGGACGAACAG
TGTAGACCCCAGTTTTCCCATATACTAAAAGCTTTCTAGACCAT
BS24913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13090-RC | 1362 | CG13090-PC | 1..1362 | 17..1378 | 6810 | 100 | Plus |
| CG13090-RB | 1362 | CG13090-PB | 1..1362 | 17..1378 | 6810 | 100 | Plus |
| CG13090-RA | 1362 | CG13090-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13090-RC | 1687 | CG13090-RC | 178..1539 | 17..1378 | 6810 | 100 | Plus |
| CG13090-RB | 1540 | CG13090-RB | 31..1392 | 17..1378 | 6810 | 100 | Plus |
| CG13090-RA | 1684 | CG13090-RA | 175..1536 | 17..1378 | 6810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8517667..8519028 | 17..1378 | 6810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:24:51 has no hits.
BS24913.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 14:16:35 Download gff for
BS24913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13090-RA | 140..1499 | 17..1376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:22 Download gff for
BS24913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13090-RA | 175..1534 | 17..1376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:30 Download gff for
BS24913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13090-RA | 175..1534 | 17..1376 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:30 Download gff for
BS24913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8517667..8519026 | 17..1376 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:22 Download gff for
BS24913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8517667..8519026 | 17..1376 | 100 | | Plus |
BS24913.pep Sequence
Translation from 16 to 1377
> BS24913.pep
MMESEVDSERTMLKREIAELRAALNQKEQCLRELDSLFSFATRPEQEVVG
NDLESPDVAVHTKLTNDDIARYSRQLILPDFGVQGQLKLKNSSVLIVGLG
GLGCPAAQYLAAAGCGHLGLVDYDEVERSNFHRQILHSEDRCGMSKAESA
RIALLELNPHCEIQCHSRMLYPHNAMHIIRGYDVVLDCTDNVPTRYLLSD
ACVMLSKPLVSGSALKMDGQLTVYNYANGPCYRCIFPVPPPPEAVTNCGD
GGVLGAVTGTIGAMQALEAIKVIVGMGDVLAGRLLIFDGGSGVFRNIRIR
SKRPNCHMCSAQPLITELINYEMFCGMHATDKNNPMLLLSTDERLSVEDY
QQKIQAQPHLLIDVRPTAEFEICQLPEAVNVPLVEILDDSYLKRLGKQLE
DKELPIVLVCRRGNDSQIAVQHLRNRFPTHFVRDLIGGLHAWTNSVDPSF
PIY*
BS24913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13090-PC | 453 | CG13090-PC | 1..453 | 1..453 | 2374 | 100 | Plus |
| CG13090-PB | 453 | CG13090-PB | 1..453 | 1..453 | 2374 | 100 | Plus |
| CG13090-PA | 453 | CG13090-PA | 1..453 | 1..453 | 2374 | 100 | Plus |
| Uba2-PA | 700 | CG7528-PA | 17..163 | 89..234 | 204 | 29.9 | Plus |
| CG1749-PA | 404 | CG1749-PA | 5..195 | 34..202 | 175 | 30.7 | Plus |
