BS24916.complete Sequence
1205 bp assembled on 2011-06-27
GenBank Submission: KX800390
> BS24916.complete
GAAGTTATCAGTCGACATGGCAAAACAAGAAGCAACAAATGGGAAAGTTC
GTAATGCATCTCTTCATCTGGAGAAGCTGTTGATCGGGGGAAAATATCGG
CTGGTAAAGCCCATTGGGTCCGGGTCCTTCGGCGATATATATCTCGGACT
AAGCATCACGGATGGATCCGAGGTGGCCATTAAGGTGGAGAAGAACGATG
CCAAGTACCCGCAGCTGATATACGAGGCGAAAGTGTACGAACAGCTGGCC
CGCTGTCCGGGCTTCCCGACTCTACTTCATTATGGATGCGAGAAGAACTA
TAATGCCATGGTTATGGACCTATTAGGTCCTTCCCTAGAAGAACTTTTTA
ACCTCTGCAAACGCCGATTCTCGCTGAAGACCGTACTCATGTTGACAGAC
CAGCTGCTAATGCGAATTGAGTGTGTCCACGAACGTGGGTTCATTCATCG
TGACATTAAACCAGATAACTTCCTAATGGGTCTGGATCGCCACTGCAACA
AGCTGTACCTCATCGATTTTGGCCTGTCCAAGAGATACAAGGACATAGAG
TCAGAGATTCATATACCATACCGCACGGATCGGAATCTAACTGGTACTGT
TCGCTATGCCTCTATAAATGCACAGATAGGCGTTGAGCAATCCCGTCGGG
ATGACATGGAGTCCATGTCCTATTGTTTGATGTACTTCAATCTGGGAAAG
TTACCCTGGCAGGGTATTACGGCCGCCAACAAGAAGCAAAAGTACGAGAA
GATATTGGAGAAAAAGACAAGCGTCACGATCGCTCAGCTCTGCAAAGGAT
TTCCCTCCGAATTTTGCCTGCTTATGACCTATGTCAGGAATCTTGGTTTC
AAGGAGCCGCCGGATCACACTTATCTTCGCCAGATATTCCGCATACTTTT
CCGCTCACTGAATCATCATTACGACTATATATATGACTGGACTGCCTTGC
AGCAGCAAAAGGATCAAATCTGCCGCAGCAGGGAACAGATTCTGGAATCG
GAACGAGAAGAGGTCCGCAAACGGGATGGGGAACGGGGTTGTGAGCCTCA
GCGGGACAAGGAGCGGCACAAGGATTTGGAGCTGGATCGACTGCACAAAA
CTTCTACCCAACAGGCAAAGTGCTCTAATGGACATCTAACAAACCGATAT
GATCGCATTGGCGATGGAGGCATTAGCAAGCGAAAGTAAAAGCTTTCTAG
ACCAT
BS24916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7094-RA | 1173 | CG7094-PA | 1..1173 | 17..1189 | 5850 | 99.9 | Plus |
| dco-RD | 1323 | CG2048-PD | 513..696 | 583..766 | 290 | 77.2 | Plus |
| dco-RC | 1323 | CG2048-PC | 513..696 | 583..766 | 290 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7094-RA | 1412 | CG7094-RA | 155..1327 | 17..1189 | 5850 | 99.9 | Plus |
| dco-RD | 4156 | CG2048-RD | 902..1085 | 583..766 | 290 | 77.2 | Plus |
| dco-RC | 3667 | CG2048-RC | 1514..1697 | 583..766 | 290 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17554439..17555611 | 1189..17 | 5850 | 99.9 | Minus |
| 3R | 32079331 | 3R | 31057156..31057339 | 766..583 | 290 | 77.2 | Minus |
| X | 23542271 | X | 12655701..12655794 | 440..533 | 230 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:27:35 has no hits.
BS24916.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:01 Download gff for
BS24916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7094-RA | 155..1325 | 17..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:08 Download gff for
BS24916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7094-RA | 155..1325 | 17..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:50 Download gff for
BS24916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7094-RA | 155..1325 | 17..1187 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:50 Download gff for
BS24916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17554441..17555611 | 17..1187 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:08 Download gff for
BS24916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17554441..17555611 | 17..1187 | 99 | | Minus |
BS24916.pep Sequence
Translation from 16 to 1188
> BS24916.pep
MAKQEATNGKVRNASLHLEKLLIGGKYRLVKPIGSGSFGDIYLGLSITDG
SEVAIKVEKNDAKYPQLIYEAKVYEQLARCPGFPTLLHYGCEKNYNAMVM
DLLGPSLEELFNLCKRRFSLKTVLMLTDQLLMRIECVHERGFIHRDIKPD
NFLMGLDRHCNKLYLIDFGLSKRYKDIESEIHIPYRTDRNLTGTVRYASI
NAQIGVEQSRRDDMESMSYCLMYFNLGKLPWQGITAANKKQKYEKILEKK
TSVTIAQLCKGFPSEFCLLMTYVRNLGFKEPPDHTYLRQIFRILFRSLNH
HYDYIYDWTALQQQKDQICRSREQILESEREEVRKRDGERGCEPQRDKER
HKDLELDRLHKTSTQQAKCSNGHLTNRYDRIGDGGISKRK*
BS24916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7094-PA | 390 | CG7094-PA | 1..390 | 1..390 | 2066 | 100 | Plus |
| CkIalpha-PG | 337 | CG2028-PG | 13..332 | 20..339 | 1062 | 60.6 | Plus |
| CkIalpha-PF | 337 | CG2028-PF | 13..332 | 20..339 | 1062 | 60.6 | Plus |
| CkIalpha-PD | 337 | CG2028-PD | 13..332 | 20..339 | 1062 | 60.6 | Plus |
| CkIalpha-PE | 337 | CG2028-PE | 13..332 | 20..339 | 1062 | 60.6 | Plus |
