Clone BS24922 Report

Search the DGRC for BS24922

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptsinah-RC
Protein status:BS24922.pep: full length peptide match
Sequenced Size:1121

Clone Sequence Records

BS24922.complete Sequence

1121 bp assembled on 2011-06-27

GenBank Submission: KX804547

> BS24922.complete
GAAGTTATCAGTCGACATGTCTGTTCGCAACTCACGCCCCCAGTTATCGT
GGCCGGAGCGGGTAAGTCCGCAAAGGACTATTGACACTCCAACGGCATCC
GGAGAAATGTTGACTCGTCGTCAATCGGCACCAGCGTTGGTCGTGCCGCC
GGAGGAGACCACGCACGTTGTGGTGGTCAAGCGGCAATCCCCGGACGCAG
CCGCTGCCGGAGAACTGGTGCCGTCTAGGCGGAAGGACTCGGTGGCTGTG
CAGTCGGGAATTGTGGCCACTGGGCCATTGGACACAACACGCAGTGGTGC
AAGAGACGATTTTCTAATGGCTTTGCTCGAGTGCCCGGTGTGCTTTGGCT
ACATAATGCCGCCAATTATGCAGTGCCCGCGTGGCCACCTCATCTGCTCC
ACCTGCCGCTCAAAGTTGACCATTTGCCCCGTCTGCCGGGTGTTCATGAC
CAACATCCGCAGCCTGGCAATGGAGAAGGTGGCCTCCAAGCTGATCTTTC
CCTGCAAGCATTCGCATTTCGGCTGCAGAGCGCGGCTCTCTTACGCAGAG
AAGACCAAGCACGAGGAGGATTGCGAATGCCGTCCGTACTTCTGCCCGTA
TCCGGATGACAAGTGCTCCTGGCAGGGACCGTTGAGGGACGTATACCAGC
ACCTGATGAGCTCCCACGAGAACGTGATCACCATGGAGGGCAACGACATC
ATCTTTTTGGCCACCAATGTGAATCTGGAGGGTGCCCTCGACTGGACAAT
GGTGCAGTCCTGCCATGGGCGGCACTTCCTCCTCTCGCTGGAGAAGATCA
ATTTGGGAGAGGACTGTCAGCAGTACTTCACCGCCTGTCGGATGATCGGC
TCCATGAAGGATGCCGCCGAGTTCGTGTATAACATCTCCTTGGAGGCCTA
TAATCGCACTCTCCGCTGGCAATCCAAGCCAAGATCAATCCGTGAGAACT
TCTCCTCGTTCACCAACGCCGACTTCCTGGTGCTCAATAAGCACACCGTC
GAACTGTTCTCTGAGGACGGTAATCTTGCCCTGAACGTGGTCATTAGGAA
GGTGGAGGAGCGTACCAACTAAAAGCTTTCTAGACCAATTTGTGGGGCGT
CTGCGAAGGGCGCGGAGGGGT

BS24922.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
sinah-RC 1056 CG13030-PC 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
sinah-RC 1450 CG13030-RC 179..1234 17..1072 5280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16859258..16860313 17..1072 5280 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:23:38 has no hits.

BS24922.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:23:59 Download gff for BS24922.complete
Subject Subject Range Query Range Percent Splice Strand
sinah-RC 179..1239 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:21 Download gff for BS24922.complete
Subject Subject Range Query Range Percent Splice Strand
sinah-RC 179..1239 17..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:18 Download gff for BS24922.complete
Subject Subject Range Query Range Percent Splice Strand
sinah-RC 179..1239 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:18 Download gff for BS24922.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16859258..16860318 17..1077 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:21 Download gff for BS24922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16852358..16853418 17..1077 99   Plus

BS24922.pep Sequence

Translation from 16 to 1071

> BS24922.pep
MSVRNSRPQLSWPERVSPQRTIDTPTASGEMLTRRQSAPALVVPPEETTH
VVVVKRQSPDAAAAGELVPSRRKDSVAVQSGIVATGPLDTTRSGARDDFL
MALLECPVCFGYIMPPIMQCPRGHLICSTCRSKLTICPVCRVFMTNIRSL
AMEKVASKLIFPCKHSHFGCRARLSYAEKTKHEEDCECRPYFCPYPDDKC
SWQGPLRDVYQHLMSSHENVITMEGNDIIFLATNVNLEGALDWTMVQSCH
GRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYNRTLR
WQSKPRSIRENFSSFTNADFLVLNKHTVELFSEDGNLALNVVIRKVEERT
N*

BS24922.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
sinah-PC 351 CG13030-PC 1..351 1..351 1868 100 Plus
sina-PC 314 CG9949-PC 8..314 55..346 766 47.9 Plus
sina-PB 314 CG9949-PB 8..314 55..346 766 47.9 Plus
sina-PA 314 CG9949-PA 8..314 55..346 766 47.9 Plus
CG2681-PA 626 CG2681-PA 162..332 53..238 220 30.3 Plus