BS24925.complete Sequence
1739 bp assembled on 2011-07-18
GenBank Submission: KX802023
> BS24925.complete
GAAGTTATCAGTCGACATGTGGAAACTCTGTCAGCCGAGAAGTCGAAGTC
GGATCAAATGTTTCAGATTCCTAATCCTGCGTTGTTGTCCCGGATTCAAG
AGATTCTCGTGCCAATCAGCAGGTGATGCAGACTCCAAAGTCGTCAAGCT
ATCAGTAGGGAGTGTCAAGGGTCGTCGACTGAGCGGTATCTATGGTGACG
AGTTCTACAGCTTCGAGGGAATTCCCTTTGCCAAGCCGCCGCTAGGGAAA
GCCCGATTTGTGGCCTCCCAATTGGCAGACCCATGGAATTCAGAGCTCGA
TGCTCGGCAGGAGAGACCGATTCCTCTGCAGATGGACAGAAGGTCGGGAA
AGGTCGTTGGCAGTGAGGATTGCCTGTACTTAAACGTATACACCAAGCAT
TTTAACGAATCTGAGCCACCTCTGCCCGTAATGGTGTATATCTACGGCGG
TGCCTTTCGCACAGGCGGAGCTGTGAAGAGCAAATACGGGCCGGATTACT
TGATGAGCAGGGATGTTGTATATGTGCTATTCAACTATCGCCTCTGCTCC
CTGGGATTCCTTAGTATGCCCAGTGGCAAGTTGGATGTGCCGGGCAATGC
GGGTCTCCATGATCAGTTACTAGCCCTTCAATGGGTTAGCCAGCACATAC
GGAACTTCAACGGAGATCCGCAGAATATAACGCTTTTTGGCGAAAGTGCG
GGGGCCGCCTCGGTGCACTTTATGATGTGTCTGCCGCAGGCGAAGGGTCT
CTTCCACAAGGCCATCATGATGTCCGGATCGATGCTGAGTCCCTGGGTGA
ATGCTCCCGATAGCGATGGTATATTCTGCCGCCTGGCCACGTCTGCAGGA
TACGAAGGACCCGCGGAAGAGGTCCCCATTTTGGAGTTTCTGCGCAACGT
GAATGCCGAAAAACTCATCGGCCACGATTTCATCTCACCCCGTGACCGTT
GCTTTGGGTTTCTTAACCCATTTGCTCCAGTTGTTGGAGGCCTGGTTGCA
GCCCCGTTTCAGCAGCTGATGAAGGAGGCGTGGTCCTGTGAAGTGCCCCT
CCTCTTGGGTGGCACTTCCTTCGAGGGACTGGTGTACTACCCATTCTGTC
AGCTGGATAATGGCTATATGCTGGAGCTGCTGAAACATGAACCAGCGATG
GTATTACCCCACGAGCTATATCAGTCGATGAGCGTCGAGGAGCGGAACAC
AGCGGCCGATGTCCTCGTTAAGTATCACTATGGACCGCGCGGTATCACCA
AGAGTAACATCACACAGATTCTAGATCTTTTCAGTTACAAGTTATTCTGG
CACGGCATACATAGGGTGGTCCTCTCCAGATTATCTCACGCACAAGCACC
TACCTATCTGTACCGGTTCGACTTCGATTCGCCCAAGTTGAATCTGATGA
GGAACCAGCTCTGCGGCGATGACATCAAACGCGGTGTTTGTCATGCGGAT
GACTTGGGCTACATTTTCCACAAGCAGGCCCAAGCGAAGCAGCCCCTTGA
CTCCCCGGAGTTCCTGACCATCCAGCGTATGGTGGGCATATTGACCACGT
TTGCCAGGACCGGCGATCCCAATTGTCCGGAGACGGGTCCGGATCCGTGG
ATGCCCGTCTCCACAAAGTCTCCCTTCAAGGCATTGAATATTGGACAGCA
GGTGGAGTGTGTAACGCAGGTCGAAAAGGACGGTCTGAAGGTGTGGAATC
GGCTATATAGTGACTTAAAATAGAAGCTTTCTAGACCAT
BS24925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est6-RA | 1707 | CG1108-PA | 1..1707 | 17..1723 | 8520 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est6-RA | 1836 | CG1108-RA | 58..1767 | 14..1723 | 8535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7525175..7526050 | 1276..401 | 4380 | 100 | Minus |
| 3R | 32079331 | 3R | 7524636..7525089 | 1723..1270 | 2225 | 99.3 | Minus |
| 3R | 32079331 | 3R | 7528334..7528720 | 400..14 | 1935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:53:22 has no hits.
BS24925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:15 Download gff for
BS24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est6-RA | 61..1760 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:57 Download gff for
BS24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est6-RA | 61..1760 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:06 Download gff for
BS24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est6-RA | 61..1760 | 17..1716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:06 Download gff for
BS24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7524643..7525082 | 1277..1716 | 99 | <- | Minus |
| 3R | 7525175..7526050 | 401..1276 | 100 | <- | Minus |
| 3R | 7528334..7528717 | 17..400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:57 Download gff for
BS24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3350365..3350804 | 1277..1716 | 99 | <- | Minus |
| arm_3R | 3350897..3351772 | 401..1276 | 100 | <- | Minus |
| arm_3R | 3354056..3354439 | 17..400 | 100 | | Minus |
BS24925.pep Sequence
Translation from 16 to 1722
> BS24925.pep
MWKLCQPRSRSRIKCFRFLILRCCPGFKRFSCQSAGDADSKVVKLSVGSV
KGRRLSGIYGDEFYSFEGIPFAKPPLGKARFVASQLADPWNSELDARQER
PIPLQMDRRSGKVVGSEDCLYLNVYTKHFNESEPPLPVMVYIYGGAFRTG
GAVKSKYGPDYLMSRDVVYVLFNYRLCSLGFLSMPSGKLDVPGNAGLHDQ
LLALQWVSQHIRNFNGDPQNITLFGESAGAASVHFMMCLPQAKGLFHKAI
MMSGSMLSPWVNAPDSDGIFCRLATSAGYEGPAEEVPILEFLRNVNAEKL
IGHDFISPRDRCFGFLNPFAPVVGGLVAAPFQQLMKEAWSCEVPLLLGGT
SFEGLVYYPFCQLDNGYMLELLKHEPAMVLPHELYQSMSVEERNTAADVL
VKYHYGPRGITKSNITQILDLFSYKLFWHGIHRVVLSRLSHAQAPTYLYR
FDFDSPKLNLMRNQLCGDDIKRGVCHADDLGYIFHKQAQAKQPLDSPEFL
TIQRMVGILTTFARTGDPNCPETGPDPWMPVSTKSPFKALNIGQQVECVT
QVEKDGLKVWNRLYSDLK*
BS24925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est6-PA | 568 | CG1108-PA | 1..568 | 1..568 | 3048 | 100 | Plus |
| alpha-Est5-PA | 542 | CG1089-PA | 14..536 | 45..564 | 1228 | 46.8 | Plus |
| alpha-Est5-PB | 543 | CG1089-PB | 15..537 | 45..564 | 1228 | 46.8 | Plus |
| alpha-Est1-PA | 565 | CG1031-PA | 28..559 | 36..564 | 1112 | 44.5 | Plus |
| alpha-Est2-PB | 566 | CG2505-PB | 34..560 | 42..564 | 1090 | 43.7 | Plus |
