Clone BS24926 Report

Search the DGRC for BS24926

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG4681-RA
Protein status:BS24926.pep: full length peptide match
Sequenced Size:1199

Clone Sequence Records

BS24926.complete Sequence

1199 bp assembled on 2011-06-27

GenBank Submission: KX802041

> BS24926.complete
GAAGTTATCAGTCGACATGGCCGAGCTTCTGTCCCGCGAGAAGGAGCTCT
TTAAGATAAACCAGGAGCTGAATCTCCTGACCCTCAGTCCAGCTGCCGAC
GCCATGTATCCGGCAAAGGGGTCATCCAAATCCACTGCGGTGGCGGTGCC
GCGCTTCGCCACCTTCCAGAAACAAAAGGGGCCGAGCAGCCTGCTCCGGA
AAAAGGGTGCTCCCACGGCGTGCACGAAGGCAGCCCCGAAAGCTTCGCCA
GGCAGAGAGACGGTGCCCACAGCCCGTTCGCCGATGCCCGATATGAGTCT
GCTGACCAAGTCCAAGCCCGCTGCCGGACCCACCTCGCCCACCCCCCGCA
ATCTTTCCAAATTTAGTACCTTCACGAAGGATGTGAGCAGCAAGACGGCT
ACGTATGTCAAGTACCGGAACCCAAACTTTAGCGAGAGTCCTTCGTTGGA
CGAACTGCTGCGTAACGACGCCGATGAGGCAAACCGAAAACCAGATGTGG
TCGAAGTGGAGGTCACACAGAAGCGAGAGAGCACAACCGTCGTCAATGGC
CAGCTGAAGAAGCAGGTCACCAAGGACAACTTTATTAAATTCCTCAAGGC
CAAGGTGGCCATTCTGGAAGAGGATCACGCTCAACACGCCGGAGAGTTGA
TCCGACAGAAGGAGCAGCTTGAGCACGCCTTGGAAGCGCAACGCAAGTCA
GAGCACCAGCGCGACCAGGCGATCAACTCCAACAAGCACCTCTCCGAGCA
ACTGATGCGGTCCGAACGGCAGTGCGAGGGTTTCAACCAGCGCCAGAAGG
AGCAGCAGCTCGAGTTCATCACCCAGCAGCGGGAGCTGGAGGTGCTGAAG
CGGGATGCCAAGGTTTCCAGGCAGACGAACATAAACCTGGAGAACCGACT
GTCCCGCGTCCAGGAGGATGCAGACGCTGCCCGCCAGGAACTCAAGCTGC
TGCGCGAGGAGCAGCGCGACCAGTTGGAGGCGCATCGGAAGGAACTAAAG
CTGCGGGACAGCCGGATCCGGGCTCTTAAACGCCAGCGCGGCGACCTGCT
CAACGCGTACAAGAAGCAGCTCTACATGATCGACAACCTGAAGCGCCAGA
CCATCTGTTTGGAGCAGTCGGCAGCCATCGGATTCGGCGAGAAGGAGTTC
AACAAGGTGCTCGACTGGAATGCCAAGACGTGAAAGCTTTCTAGACCAT

BS24926.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4681-RA 1167 CG4681-PA 1..1167 17..1183 5820 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4681-RA 1497 CG4681-RA 230..1396 17..1183 5820 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24578348..24578946 1183..585 2980 99.8 Minus
2R 25286936 2R 24579027..24579598 588..17 2845 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:31:54 has no hits.

BS24926.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:05 Download gff for BS24926.complete
Subject Subject Range Query Range Percent Splice Strand
CG4681-RA 184..1349 17..1182 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:56 Download gff for BS24926.complete
Subject Subject Range Query Range Percent Splice Strand
CG4681-RA 230..1395 17..1182 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:28 Download gff for BS24926.complete
Subject Subject Range Query Range Percent Splice Strand
CG4681-RA 230..1395 17..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:28 Download gff for BS24926.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24578349..24578942 589..1182 100 <- Minus
2R 24579027..24579598 17..588 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:56 Download gff for BS24926.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20465872..20466465 589..1182 100 <- Minus
arm_2R 20466550..20467121 17..588 99   Minus

BS24926.pep Sequence

Translation from 16 to 1182

> BS24926.pep
MAELLSREKELFKINQELNLLTLSPAADAMYPAKGSSKSTAVAVPRFATF
QKQKGPSSLLRKKGAPTACTKAAPKASPGRETVPTARSPMPDMSLLTKSK
PAAGPTSPTPRNLSKFSTFTKDVSSKTATYVKYRNPNFSESPSLDELLRN
DADEANRKPDVVEVEVTQKRESTTVVNGQLKKQVTKDNFIKFLKAKVAIL
EEDHAQHAGELIRQKEQLEHALEAQRKSEHQRDQAINSNKHLSEQLMRSE
RQCEGFNQRQKEQQLEFITQQRELEVLKRDAKVSRQTNINLENRLSRVQE
DADAARQELKLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKK
QLYMIDNLKRQTICLEQSAAIGFGEKEFNKVLDWNAKT*

BS24926.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4681-PA 388 CG4681-PA 1..388 1..388 1947 100 Plus