Clone BS24930 Report

Search the DGRC for BS24930

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG12439-RA
Protein status:BS24930.pep: full length peptide match
Sequenced Size:728

Clone Sequence Records

BS24930.complete Sequence

728 bp assembled on 2011-06-27

GenBank Submission: KX805091

> BS24930.complete
GAAGTTATCAGTCGACATGGTCAGCGCAAAAACTATTATAGCTACTGGTG
TGCTGAACATCCTGGGCATTTCCTTTTTCGTGGCCCAGCCAAAGGATCGA
TGCTCGGCAGCTCCACCCGTTGGAAAGTATATCTTCCTACTAGCTATTCT
TCTGCTCTTTTGGGATTCAGACATGATTCCAAGGAAATTGAAACCGTTTT
CCCCACGGATTTTTGCCTGCGGAGATCTTTTATTCACGATCTTCTTCACC
GAAATAATCCTGCTGGTCGGATGGTGTGGCCTCGAGAGGATGACCTATCG
ATTTATATTTTCTGTGTGCCGTGGAAAACCTGGTTGCAATTACGGATTAA
TGACTTTCTGCAGCATCTTAGGTGCCGTTGGATCACTATGCATTGTGCTC
GAGGTGTTGACACAGCGGAAGATGAAGAATTTGGTGGGACAGAACAGTGC
CGGCTTGCTTATTCCTCAGGACGCCGGACCAGTGTTCAAATTCATTCATG
ATGTGCGAACCTTTGTGAGGGGCGCCATATACTTTTTCCAATTGACTCGG
GAGGAACGTATTCTATCAGTCCACGCCTTCGAGGCTCAATTGCGCTACAA
GAAGGGACAGGACGTACAACCTGGTGAACCTGCTGTCCAGGATTCCGGGA
ATCAAATGGACGCCGGTAAATCGACGACAGAACCGGAAATCGTCCACGAG
TTGTCCCCGTAAAAGCTTTCTAGACCAT

BS24930.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12439-RB 696 CG12439-PB 1..696 17..712 3420 99.4 Plus
CG12439-RA 696 CG12439-PA 1..696 17..712 3420 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12439-RB 868 CG12439-RB 122..818 17..713 3425 99.4 Plus
CG12439-RA 799 CG12439-RA 53..749 17..713 3425 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9077242..9077938 17..713 3425 99.4 Plus
Blast to na_te.dros performed on 2014-11-26 15:36:40 has no hits.

BS24930.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:08 Download gff for BS24930.complete
Subject Subject Range Query Range Percent Splice Strand
CG12439-RA 53..746 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:48 Download gff for BS24930.complete
Subject Subject Range Query Range Percent Splice Strand
CG12439-RA 53..746 17..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:23 Download gff for BS24930.complete
Subject Subject Range Query Range Percent Splice Strand
CG12439-RA 53..746 17..710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:23 Download gff for BS24930.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9077242..9077935 17..710 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:48 Download gff for BS24930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9077242..9077935 17..710 99   Plus

BS24930.pep Sequence

Translation from 16 to 711

> BS24930.pep
MVSAKTIIATGVLNILGISFFVAQPKDRCSAAPPVGKYIFLLAILLLFWD
SDMIPRKLKPFSPRIFACGDLLFTIFFTEIILLVGWCGLERMTYRFIFSV
CRGKPGCNYGLMTFCSILGAVGSLCIVLEVLTQRKMKNLVGQNSAGLLIP
QDAGPVFKFIHDVRTFVRGAIYFFQLTREERILSVHAFEAQLRYKKGQDV
QPGEPAVQDSGNQMDAGKSTTEPEIVHELSP*

BS24930.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12439-PB 231 CG12439-PB 1..231 1..231 1202 100 Plus
CG12439-PA 231 CG12439-PA 1..231 1..231 1202 100 Plus
CG34181-PA 203 CG34181-PA 3..95 7..100 152 35.1 Plus