BS24935.complete Sequence
941 bp assembled on 2011-06-27
GenBank Submission: KX802616
> BS24935.complete
GAAGTTATCAGTCGACATGTCGCACCGCCACCAGGACATTCCCATCCGCC
CACGTTACGGTTATGTGGCCGAGGAGAGTGGCCCATCGGAAGGGGCAGCC
AGGAGTTCCGGATCCGGAGCCACGCCCGCCTCCTCCTACACGGAAATTCC
GTTCCTGGCTCAGTATCCGGGAGCGGTGCCAGAGCACGTGCTCCAGGATC
TGACGCCCACAGCCACTGGCCATGCTGCGATTCCCGGAAGCACAAAGACA
AGACCCAACGGCGAGAAATACCTTAACCTGGATTCGGGCGAGGATCCCGA
CGAGGAAGACGATCCCTTGGAGGAGGAGGACAACAGCAACTCGAATAGCA
ACTCCAAGGGCAGTTCCGGCGACATCGAGAGGCACAGACTGAAGGCAGAG
AGCACTGTGCCCTACGAGCTGGACGGCGAAACCAGTGACTCCGACGGGAT
GCGCCACTTTGTGGCCCACGATCTAGAGGCCAAGTTGCGCGAGCGCGTGG
CGGCTTCGGCCTACTCCTCGGAGCACACCACGCCCCTGAGCTCCATGGGT
CCCATTGGAGCCACTTCCGGCAACGGTCTGCTCACGCGGCGGTTCCTGCA
GTCGCGCAACATTCCCGAAGTGGACGGCAGCGTCTTGAGCGACATCGAAC
TGGAGGCTCAGTACTTGGCCAGCTCGGTGGACAATCTGATGGAGAACCTT
GGCAACCTGCTACACTCGATCTCTTCCATAACTGCCGACAACGTGGAGGT
CCACCGCAACGCGGTCAACAAGCTGACGGACACTTTGGACGCGAATATCA
AGTGCCAGTATCAATTGCTGGCCAAGGCGGAGGAAATCACCAAGTCGATG
AAACCCACAGAGCAGCTGGGTCAGCGCATAAGGCAGATCAAGCGGCTGGT
GGACATGTTGGACAGCACCATGTAAAAGCTTTCTAGACCAT
BS24935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17180-RB | 909 | CG17180-PB | 1..909 | 17..925 | 4380 | 98.8 | Plus |
| CG17180-RA | 909 | CG17180-PA | 1..909 | 17..925 | 4380 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17180-RB | 1097 | CG17180-RB | 104..1014 | 17..927 | 4390 | 98.8 | Plus |
| CG17180-RA | 1123 | CG17180-RA | 130..1040 | 17..927 | 4390 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 541485..541959 | 405..879 | 2255 | 98.3 | Plus |
| 3L | 28110227 | 3L | 541041..541428 | 17..404 | 1895 | 99.2 | Plus |
| 3L | 28110227 | 3L | 542012..542064 | 875..927 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:30:55 has no hits.
BS24935.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:04 Download gff for
BS24935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17180-RA | 130..1036 | 17..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:45 Download gff for
BS24935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17180-RA | 130..1036 | 17..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:05 Download gff for
BS24935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17180-RA | 130..1036 | 17..923 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:05 Download gff for
BS24935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 541041..541428 | 17..404 | 99 | -> | Plus |
| 3L | 541485..541959 | 405..879 | 98 | -> | Plus |
| 3L | 542017..542060 | 880..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:45 Download gff for
BS24935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 541041..541428 | 17..404 | 99 | -> | Plus |
| arm_3L | 541485..541959 | 405..879 | 98 | -> | Plus |
| arm_3L | 542017..542060 | 880..923 | 100 | | Plus |
BS24935.pep Sequence
Translation from 16 to 924
> BS24935.pep
MSHRHQDIPIRPRYGYVAEESGPSEGAARSSGSGATPASSYTEIPFLAQY
PGAVPEHVLQDLTPTATGHAAIPGSTKTRPNGEKYLNLDSGEDPDEEDDP
LEEEDNSNSNSNSKGSSGDIERHRLKAESTVPYELDGETSDSDGMRHFVA
HDLEAKLRERVAASAYSSEHTTPLSSMGPIGATSGNGLLTRRFLQSRNIP
EVDGSVLSDIELEAQYLASSVDNLMENLGNLLHSISSITADNVEVHRNAV
NKLTDTLDANIKCQYQLLAKAEEITKSMKPTEQLGQRIRQIKRLVDMLDS
TM*
BS24935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17180-PB | 302 | CG17180-PB | 1..302 | 1..302 | 1542 | 100 | Plus |
| CG17180-PA | 302 | CG17180-PA | 1..302 | 1..302 | 1542 | 100 | Plus |
