BS24937.complete Sequence
1187 bp assembled on 2011-06-27
GenBank Submission: KX803969
> BS24937.complete
GAAGTTATCAGTCGACATGGACTCGCAGGAGGGTACTCAGTGCCAGATCC
TGGCCATCGTCATTCGGGTGTGTGTGTTTAGCGCGTTAACGTACTACACT
GCCAAATGGATGATCAATGCGCTGGATCCCAATAATAAGATCCGGGGTAA
GGCGAAATATGTTGCGGAAGAGCAGCTGCGCAAGCTGAACTCCTCGGCGA
TTGGCGCGGCAAAGAAGTTTCGAGCCCGTGACTTTAATGAGCACGAGATG
ATGATTGCTTCGCATCTGGTGACGCCTGAGGACATTGATATCAGTTGGTC
GGATATTGCCGGACTGGATGGGACTATTCAGGAGCTTAGGGAGACGGTGG
TTCTCCCAGTGCGTCATCGTAAGCTCTTTAGCCGATCGAAACTGTGGCGA
GCGCCCAAGGGAGTCCTGCTGCATGGACCGCCTGGTTGTGGCAAGACCCT
GATCGCCAAGGCCATTGCCAAGGATGCTGGGATGCGATTCATCAATCTGG
ACGTGGGTGTGCTAACGGACAAGTGGTACGGCGAAAGCCAGAAGCTGGCC
ACAGCCGTTTTCACGCTGGCCAAAAAACTTCAGCCCTGCATCATCTTCAT
AGACGAAATTGAATCTTTTCTCAGGATGCGCGGTAGCAATGATCACGAGG
CAACCGCCATGATTAAGACTCAGTTTATGTTGCAGTGGGATGGGTTAATG
AGCAATACCAACATTTGTGTCCTCGTTTTGGGGGCCACAAACCGGCCGCA
AGACCTCGATAAAGCCATCCTGCGCCGTATGCCCGCACAATTTCACATTG
GAGTGCCGCGAGACTGCCAGCGACGCGAAATCCTTCAGTTGATCCTCCAG
ACAGAGCAACTGAGTCCTTCGGTTAATCTGAAGGAGCTGGCCCGACTGAC
GATTGGATTTTCAGGATCCGATTTGCGGGAATTGTGTCGCCACGCATCCA
TGTACCGTATGCGCCAGTTTATGCGCGAAAAGCTGAACACCGGCGAGGAA
ATTGGAAAAGACAAGATTGAATGGGACTTCGAGGTAAAGGATCAGGCCTT
GCAGGAGTGGGAGCACTTGGAAATTCAAATGGAAGACCTTCTCAAGTCGC
TGTCCGTCATGAAGGCGTCGAAACATCAGGCGCAGGGCACTTTTCTCGAA
AAGGATCTGGAGTTGGACTGAAAGCTTTCTAGACCAT
BS24937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4701-RA | 1155 | CG4701-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
| nmd-RC | 1110 | CG5395-PC | 281..791 | 291..801 | 335 | 71 | Plus |
| nmd-RB | 870 | CG5395-PB | 41..551 | 291..801 | 335 | 71 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4701-RA | 1318 | CG4701-RA | 100..1254 | 17..1171 | 5775 | 100 | Plus |
| nmd-RC | 1719 | CG5395-RC | 392..902 | 291..801 | 335 | 71 | Plus |
| nmd-RB | 1172 | CG5395-RB | 264..774 | 291..801 | 335 | 71 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14766007..14767161 | 17..1171 | 5775 | 100 | Plus |
| 2L | 23513712 | 2L | 10302990..10303500 | 801..291 | 335 | 71 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:37:43 has no hits.
BS24937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:09 Download gff for
BS24937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1253 | 17..1170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:04 Download gff for
BS24937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1253 | 17..1170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:46 Download gff for
BS24937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1253 | 17..1170 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:46 Download gff for
BS24937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14766007..14767160 | 17..1170 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:04 Download gff for
BS24937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14766007..14767160 | 17..1170 | 100 | | Plus |
BS24937.pep Sequence
Translation from 16 to 1170
> BS24937.pep
MDSQEGTQCQILAIVIRVCVFSALTYYTAKWMINALDPNNKIRGKAKYVA
EEQLRKLNSSAIGAAKKFRARDFNEHEMMIASHLVTPEDIDISWSDIAGL
DGTIQELRETVVLPVRHRKLFSRSKLWRAPKGVLLHGPPGCGKTLIAKAI
AKDAGMRFINLDVGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIES
FLRMRGSNDHEATAMIKTQFMLQWDGLMSNTNICVLVLGATNRPQDLDKA
ILRRMPAQFHIGVPRDCQRREILQLILQTEQLSPSVNLKELARLTIGFSG
SDLRELCRHASMYRMRQFMREKLNTGEEIGKDKIEWDFEVKDQALQEWEH
LEIQMEDLLKSLSVMKASKHQAQGTFLEKDLELD*
BS24937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4701-PA | 384 | CG4701-PA | 1..384 | 1..384 | 1978 | 100 | Plus |
| nmd-PC | 369 | CG5395-PC | 15..369 | 10..384 | 1145 | 58.9 | Plus |
| nmd-PA | 369 | CG5395-PA | 15..369 | 10..384 | 1145 | 58.9 | Plus |
| nmd-PB | 289 | CG5395-PB | 1..289 | 79..384 | 996 | 62.7 | Plus |
| CG3326-PB | 523 | CG3326-PB | 247..481 | 92..327 | 484 | 41.8 | Plus |
