Clone BS24938 Report

Search the DGRC for BS24938

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG10748-RA
Protein status:BS24938.pep: gold
Sequenced Size:1082

Clone Sequence Records

BS24938.complete Sequence

1082 bp assembled on 2011-06-28

GenBank Submission: KX802272

> BS24938.complete
GAAGTTATCAGTCGACATGTTGTTACTGACAAGTCTTAAAAGCCTGGCAA
AACCAGCTACATGGGGAGTTGTGGTCCGCACTTTAAAGGTCGCCGTTGTC
GGTGCCGGAGGAGGAATTGGACAACCGCTATCGCTTCTGCTCCGTCGCTG
TCCTGGAATCGATGAGCTGGCTCTACATGATCTCAGCGAAATGAAGGGAA
TTGCTACGGATCTATCCCATATAAGCCAAACGGGAAAGGTGATAGGTTTT
ACCGGTGAAAAGGAACTGGAGTCGGCGGTGAGTGGAGCTGATGTGGTGGT
TGTGGCGGCAGGAATGCCACGTCTGCCAGGAATGCAAAGGGATCACCTGA
TGGCCGCCAATGGAAATGTTGCAGTGAAAGTTGCCACTGCCATTAGCAAT
GCCTCTCCACGAGCTCATCTTGCCTTTATTACCAATCCGGTCAATATGAT
TGTGCCCGCCGCAGCTGAGGTTCTTATGGCCCATGGAACTTTTGATTCTC
GTCGGCTCTTCGGTATTACGACTTTGGATGTGGTGCGATCGAAAAAGTTC
ATTGGTGATTCTATGAACATATCACCGGATGACGTAAACATTCCAGTTAT
TGGTGGCCATGCGGGGATTACAATTCTACCGCTCATTTCGCAGTGTCAGC
CGATATATAGATGTGATCTCCAGGAGATCCAGAATCTAACTCATCGCATT
CAGGAGGCGGGCACAGAGGTGGTGAATGCCAAAGCTGGAAAAGGATCTGC
CACCCTATCGATGGCTTATGCTGGCGCAACTTTCGTGAACTCCCTGCTGC
GTGGAATTGCTGGACAGGATGGTCTAATCGAGTGCGCTTTTGTCGCCTCC
AAACTAACCGACGCCCCATTCTTTGCTAGTCCATTGGAATTGGGAAAGGA
TGGTATCAAGCGCTATATACCACTTCCCCAGATGAGTGACTACGAAAAGG
AGGCTTTGGAAAAGCTGCTACCTATTCTACGACAGAATGCTGATGAGGGT
GTCAATTTTGCAAAAATGATTTTGAGTGGACAATCACATTCTCCCATTCC
AGCGGCCTTGCCGTAAAAGCTTTCTAGACCAT

BS24938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10748-RA 1050 CG10748-PA 1..1050 17..1066 5220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10748-RA 1146 CG10748-RA 29..1080 17..1068 5230 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12971280..12972331 1068..17 5230 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 16:22:33 has no hits.

BS24938.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:44:09 Download gff for BS24938.complete
Subject Subject Range Query Range Percent Splice Strand
CG10748-RA 34..1076 22..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:16 Download gff for BS24938.complete
Subject Subject Range Query Range Percent Splice Strand
CG10748-RA 34..1076 22..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:33 Download gff for BS24938.complete
Subject Subject Range Query Range Percent Splice Strand
CG10748-RA 34..1076 22..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:33 Download gff for BS24938.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12971284..12972326 22..1064 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:16 Download gff for BS24938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12964384..12965426 22..1064 99   Minus

BS24938.pep Sequence

Translation from 16 to 1065

> BS24938.pep
MLLLTSLKSLAKPATWGVVVRTLKVAVVGAGGGIGQPLSLLLRRCPGIDE
LALHDLSEMKGIATDLSHISQTGKVIGFTGEKELESAVSGADVVVVAAGM
PRLPGMQRDHLMAANGNVAVKVATAISNASPRAHLAFITNPVNMIVPAAA
EVLMAHGTFDSRRLFGITTLDVVRSKKFIGDSMNISPDDVNIPVIGGHAG
ITILPLISQCQPIYRCDLQEIQNLTHRIQEAGTEVVNAKAGKGSATLSMA
YAGATFVNSLLRGIAGQDGLIECAFVASKLTDAPFFASPLELGKDGIKRY
IPLPQMSDYEKEALEKLLPILRQNADEGVNFAKMILSGQSHSPIPAALP*

BS24938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10748-PA 349 CG10748-PA 1..349 1..349 1753 100 Plus
Mdh2-PA 336 CG7998-PA 26..334 24..332 856 52.4 Plus
CG10749-PA 347 CG10749-PA 22..340 17..333 831 52 Plus