BS24942.complete Sequence
1937 bp assembled on 2011-08-04
GenBank Submission: KX800853
> BS24942.complete
GAAGTTATCAGTCGACATGCAGCACTCCAGCATGAAGGTGGATCTATCAA
ACTTTTTCAAGGACGAACGACGAAATTCGTTGGTTTTCATCGATGCAGCA
TGGAACAACATCAAGGACCTCCAGGACCACATACAAAACCTCTTCAGCTT
GAAGGACATTAGTCTGCTCACCTCAGATGGATGCTATCTGCCCCCGAGGG
AGTCTATCAAAGTGTTGAACTCTGCCGAAGGACTCAAAGCCTTTCGGTTT
GCCAGCCACGATAGTGATACCTTTGTGAGCCCTGCTCCTGTAAAATCCAG
TAAAAAGCGCAAGAATCGATCCGTCGAGGAACAGGTTCACCTAACCGCCT
CCACTCCCCTCCGACCTTCAAAGCGCTCCAAGAACCAGAACAACTCAGAA
TGGATAAATATTGCAGAAAACCCATCTCGTGTGAGAAAGAAGGAGTTGCT
AGATATGGCTCCTGGACCTTCTGTACAATCAAAGCTCTTGACAAACAAAG
GCACTCCAAAGGCCCCTGAAACTCAGACAGAAGTTTCTAACATGTCAGCG
AACATCGAGACAGAGAACAAGGAATCTGCTCCTCAGATTAAAAATAAATC
CAAAAACAAGAAACCGACCAAATCGCCCGAGGCATCTGACCAGGTAGAGA
ATGAACCTGCTCCTAAGAGTATTTCTCGATGCACGCTCAAGGAGGGTAAA
ATGTCAGAAAGCAAGAATCAAGAGACATCGCCTGACATTCTATCAGAAAA
ATCTGGTGTGGTAACGAAGGAAAACGAAACTCGAGAGGAGCAACAGGACA
AAACACACTTGGAGTCCAACAAAATTCCGGATAAACTATCTCAACTGAAA
GCAGGGGACCAAATTGAGAAGAGTCCTGGCATTGCTGCTAGCCTCCTATC
GATTTCGTTCCGCTCCCCTCTCTTGGAGATGCCCTTTAATGTTCCGCGCA
TATTTCAATTTCCCACTAAAAAACAACAAATTGAAATTCTGGAATATAAA
AAACTTAAGCCCATCAGTCCTCGTTTTTTGCTGCAGAAAGGGGCTAAGAG
TGATGATACGGCTAAACAATTCCCAAGCAATGGGAAGGATTCAACCTTAA
AGCCTAAATCCTACGAAATTTTGCACGACGAAGAATTACCAGATGTAAAG
GATAAAAAAAATGTTTCAGAAGGTATAAAGAGAGCAGTTGCACCTCTTTG
CGAAGACATCATTGAAACATCAACCACTCTTCCGGGGGCCATAGGAGCAG
TTGAATCCGCTTATCTGGACAATTCGACTGAAGCTGAGACCACTCTTCCG
TCCGAAGCTGAAGCAACTAATCCACTTGAACTTACTGAGTCATTTCTACA
GAACAACACATCTATGGAAAAAACACCCAAAGTCGAAAAAATTTTGCCAG
ATGACGGAAGTGCATCTCCGATTAAAAATAACGTTGATTCGAAGGATGTT
AAAACGGTAACAGTGCCCATTTTTGAGGAACAACTAGTATCCGATTCCGA
CGACGATGTGATGTTGGTAGACGACTCCAATATCGACGTTTCATACGGCG
ACTCTGATATTGAACCGATTCCAGTAGTAGAAAATAGGCAATCTTTGGAT
ATTATAAGGGACCTACTGCGGACTGCAACTCCACTCAATAGCCTGCCGTC
CAGGGGCGATACGGTTATATTTAAACTGCTGAAGATTAAGGGAAACGCCA
ATTCTGGCACAACCGAATTTGTCGCCGGGAGGTGCACTTACGTTAACCGG
CGCACCAAAATTGTCACAGTGGAAACAATAACTTATCCCCCCGAAATCGG
TCGCATGTTGCGTCAATATTATATGAGTGGGTTGGACGAGTCTTCTGAGG
ATGTGCGAACTTTAAGTATTCATCTCAAAGATATGCTTGAAGCGAAAATC
ATTGTAGCCACAATTGACTGAAAGCTTTCTAGACCAT
BS24942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| coil-RD | 1905 | CG8710-PD | 1..1905 | 17..1921 | 9480 | 99.8 | Plus |
| coil-RE | 1902 | CG8710-PE | 1..1902 | 17..1921 | 9400 | 99.7 | Plus |
| coil-RC | 1467 | CG8710-PC | 1..1467 | 455..1921 | 7305 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| coil-RD | 2037 | CG8710-RD | 44..1948 | 17..1921 | 9480 | 99.8 | Plus |
| coil-RE | 2034 | CG8710-RE | 44..1945 | 17..1921 | 9400 | 99.7 | Plus |
| coil-RC | 2091 | CG8710-RC | 319..2002 | 238..1921 | 8390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8125533..8126869 | 1574..238 | 6670 | 99.9 | Minus |
| 2R | 25286936 | 2R | 8125267..8125475 | 1781..1573 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 8125070..8125209 | 1921..1782 | 685 | 99.3 | Minus |
| 2R | 25286936 | 2R | 8127065..8127199 | 151..17 | 660 | 99.3 | Minus |
| 2R | 25286936 | 2R | 8126924..8127010 | 237..151 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:00:52 has no hits.
BS24942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:34 Download gff for
BS24942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coil-RD | 44..1947 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:08 Download gff for
BS24942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coil-RD | 44..1947 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:21 Download gff for
BS24942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coil-RD | 44..1947 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:21 Download gff for
BS24942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8125071..8125209 | 1782..1920 | 99 | <- | Minus |
| 2R | 8125267..8125473 | 1575..1781 | 100 | <- | Minus |
| 2R | 8125533..8126869 | 238..1574 | 99 | <- | Minus |
| 2R | 8126924..8127009 | 152..237 | 100 | <- | Minus |
| 2R | 8127065..8127199 | 17..151 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:08 Download gff for
BS24942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4014570..4014704 | 17..151 | 99 | | Minus |
| arm_2R | 4012576..4012714 | 1782..1920 | 99 | <- | Minus |
| arm_2R | 4012772..4012978 | 1575..1781 | 100 | <- | Minus |
| arm_2R | 4013038..4014374 | 238..1574 | 99 | <- | Minus |
| arm_2R | 4014429..4014514 | 152..237 | 100 | <- | Minus |
BS24942.pep Sequence
Translation from 16 to 1920
> BS24942.pep
MQHSSMKVDLSNFFKDERRNSLVFIDAAWNNIKDLQDHIQNLFSLKDISL
LTSDGCYLPPRESIKVLNSAEGLKAFRFASHDSDTFVSPAPVKSSKKRKN
RSVEEQVHLTASTPLRPSKRSKNQNNSEWINIAENPSRVRKKELLDMAPG
PSVQSKLLTNKGTPKAPETQTEVSNMSANIETENKESAPQIKNKSKNKKP
TKSPEASDQVENEPAPKSISRCTLKEGKMSESKNQETSPDILSEKSGVVT
KENETREEQQDKTHLESNKIPDKLSQLKAGDQIEKSPGIAASLLSISFRS
PLLEMPFNVPRIFQFPTKKQQIEILEYKKLKPISPRFLLQKGAKSDDTAK
QFPSNGKDSTLKPKSYEILHDEELPDVKDKKNVSEGIKRAVAPLCEDIIE
TSTTLPGAIGAVESAYLDNSTEAETTLPSEAEATNPLELTESFLQNNTSM
EKTPKVEKILPDDGSASPIKNNVDSKDVKTVTVPIFEEQLVSDSDDDVML
VDDSNIDVSYGDSDIEPIPVVENRQSLDIIRDLLRTATPLNSLPSRGDTV
IFKLLKIKGNANSGTTEFVAGRCTYVNRRTKIVTVETITYPPEIGRMLRQ
YYMSGLDESSEDVRTLSIHLKDMLEAKIIVATID*
BS24942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| coil-PD | 634 | CG8710-PD | 1..634 | 1..634 | 3205 | 100 | Plus |
| coil-PE | 633 | CG8710-PE | 1..633 | 1..634 | 3189 | 99.8 | Plus |
| coil-PC | 488 | CG8710-PC | 1..488 | 147..634 | 2457 | 100 | Plus |
