BS24946.complete Sequence
1256 bp assembled on 2011-09-14
GenBank Submission: KX801732
> BS24946.complete
GAAGTTATCAGTCGACATGTTTCGAATCTCTGGCCTTCTGAGTTCACTCG
TAGTCCTTACTTTTGTTCTGGAAATCAGTTGCCTGGAGAATGGCACCCTG
GCCAAGCTGAAAAAGTTTGTGAACTGTGAGTCTAAGGCTTACAAGTCCAG
CAATGCGATCTACAAGGATTACTGGGTGCTGGAGAACTATGTAATGGCTG
ATCACGGCGATATTCCGTGCTATTCGAATGTGACCTACACCACCCATGCG
GACTATACGTATCTGGATAATGTGGTGCCGCTCCTGGAACGCTGGCGATC
GCCCCTCAGCCTGGCCATATATGCTCCTGGCACGGACTTCGAGCCCACTA
TACACAGCATTTTGTACCTGCTGCAGTGCCATCCTGGCCACGACCTGGTT
CGCCAGCTGTGCAGCATTCATTTGTACTTCGATGTGGAGCACTTGCCCCA
GGTGGTTCTGCCACCCGAAACGACTCTAAGGGAGCCAGCCAACTGTAGTG
GACCACCGCCATATGAGAATGTCGTTAAAGGGAACATGTACAGGTCTCGA
AACACACTGGATTATCCCGTCAATATGGGACGCAACGTTGCACGCCGGGC
TTCGCTGACGCACTACGTCCTGGCCTCGGACATCGAGCTCTATCCCACGC
CCGGATTGGTGCCCGACTATATGCATTTCCTTGGCCGCCAAGTGATTGGA
ATTCCAGGACAGCAGCCTACTTCGCCGTTGGTCCATGTACTGCGGATTTT
CGAGGTAATGGCCAATGTATCTGTACCGAACACCAAGCCAGAGTTGCAAG
AGATGTTGAAGTCGGGCGAAGCTGTGCCATTTCACATGGACATCTGTGAG
GCGTGCCATAGGGGACCCAACCTGGAGGAGTGGATAAATGCGAGCGTTGT
GTCCAAGGAACTGAATGTCTTCAATGTTGGCCACCGCTCGGAAAATAACA
ACAATTGGGAGCCAATATTTTTGGGCACCGTCGAGGATCCTCCATACGAT
GAGCGATTAACGTGGGAGGGTCAACGGGACAAGATGACCCAGGCGTATGC
CATGTGCGTTCTGGACTACGAGTTCCATATCCTGGACAACGCCTTCCTGG
TCCATAAGCCCGGCATCAAACAGCCAGGCAATCGTAAGGAGATCTTCCCT
CAAGCCCGCCGAACCAATGGGCTTATCGATAAAAAGATCTCCAGGGAGAT
GCGGATGATGTACGGTTCTCGGAATGGTTGTGTTATTTAGAAGCTTTCTA
GACCAT
BS24946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15483-RA | 1224 | CG15483-PA | 1..1224 | 17..1240 | 6015 | 99.4 | Plus |
| CG9171-RG | 1635 | CG9171-PG | 1408..1514 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RF | 1635 | CG9171-PF | 1408..1514 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RG | 1635 | CG9171-PG | 579..756 | 172..349 | 185 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15483-RA | 1382 | CG15483-RA | 49..1273 | 17..1241 | 6020 | 99.4 | Plus |
| CG9171-RG | 3950 | CG9171-RG | 1999..2105 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 1785..1891 | 1013..1119 | 250 | 82.2 | Plus |
| CG9171-RG | 3950 | CG9171-RG | 1170..1347 | 172..349 | 185 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12761116..12761792 | 693..17 | 3355 | 99.7 | Minus |
| 2L | 23513712 | 2L | 12760455..12761004 | 1241..692 | 2675 | 99.1 | Minus |
| 2L | 23513712 | 2L | 5769437..5769501 | 1119..1055 | 190 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:25:19 has no hits.
BS24946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 12:05:30 Download gff for
BS24946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15483-RA | 55..1272 | 23..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:43 Download gff for
BS24946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15483-RA | 55..1272 | 23..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:16 Download gff for
BS24946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15483-RA | 55..1272 | 23..1240 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:16 Download gff for
BS24946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12760456..12761004 | 692..1240 | 99 | <- | Minus |
| 2L | 12761118..12761786 | 23..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:43 Download gff for
BS24946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12760456..12761004 | 692..1240 | 99 | <- | Minus |
| arm_2L | 12761118..12761786 | 23..691 | 99 | | Minus |
BS24946.pep Sequence
Translation from 16 to 1239
> BS24946.pep
MFRISGLLSSLVVLTFVLEISCLENGTLAKLKKFVNCESKAYKSSNAIYK
DYWVLENYVMADHGDIPCYSNVTYTTHADYTYLDNVVPLLERWRSPLSLA
IYAPGTDFEPTIHSILYLLQCHPGHDLVRQLCSIHLYFDVEHLPQVVLPP
ETTLREPANCSGPPPYENVVKGNMYRSRNTLDYPVNMGRNVARRASLTHY
VLASDIELYPTPGLVPDYMHFLGRQVIGIPGQQPTSPLVHVLRIFEVMAN
VSVPNTKPELQEMLKSGEAVPFHMDICEACHRGPNLEEWINASVVSKELN
VFNVGHRSENNNNWEPIFLGTVEDPPYDERLTWEGQRDKMTQAYAMCVLD
YEFHILDNAFLVHKPGIKQPGNRKEIFPQARRTNGLIDKKISREMRMMYG
SRNGCVI*
BS24946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15483-PA | 407 | CG15483-PA | 1..407 | 1..407 | 2192 | 100 | Plus |
| CG9171-PG | 544 | CG9171-PG | 171..544 | 30..407 | 1046 | 50.8 | Plus |
| CG9171-PF | 544 | CG9171-PF | 171..544 | 30..407 | 1046 | 50.8 | Plus |
| CG9171-PE | 544 | CG9171-PE | 171..544 | 30..407 | 1046 | 50.8 | Plus |
| CG9171-PD | 544 | CG9171-PD | 171..544 | 30..407 | 1046 | 50.8 | Plus |
