BS24948.complete Sequence
1778 bp assembled on 2011-07-19
GenBank Submission: KX805255
> BS24948.complete
GAAGTTATCAGTCGACATGGCTTTAAAAAGGTTGAAGACCAAGAAATCCA
AGAGGCTCACCGGTCGCTTGAAGCACAAGATCGAAAAGAAGGTGCGGGAC
CACAACAAAAAGGAACGTCGCGCAGCCAAGAAGAATCCGAAGAAGGGTAG
CAAGAAACAGAAGCTCATCCAGATCCCGAACATCTGTCCCTTCAAGGATG
ACATCCTCAAGGAGGTGGAGGAGGCCAAGCAACGTCAGGAGGCCGAACGT
TTGGCTCGCCGCGAAGCCTTTAAGGCGGAACGCGAACAGAACAAGTTCAA
GACGCTGGAGTCCATGGTCGAGGATGCAGACATGCGGAGCACCGTGCACG
GAATAATGCACGAAAACGATGCCCAGGATCAGGACGAAAAGAAGTACAAG
AACGCCGTGACCAAAGAGCAGTCATTGAAGCAGTACTTCAAGGAATTCCG
CAAGGTGATAGAAAATGCCGACGTTGTCCTGGAGGTGGTTGATGCACGTG
ACCCCCTGGGAACCCGCTGCAATGAAGTTGAGCGCGCCGTTCGCGGTGCT
CCGGGCAACAAGCGACTGGTCCTGGTGCTCAACAAAGCCGACCTGGTGCC
GCGAGAGAATCTGAACAACTGGATCAAGTACTTCCGTCGCAGCGGACCTG
TCACCGCCTTCAAGGCTTCCACACAGGATCAGGCCAACCGGCTGGGACGC
CGCAAACTCCGCGAAATGAAAACCGAGAAGGCTATGCAGGGTTCTGTCTG
TATTGGCGCTGAGTTGCTTATGTCCATGCTGGGCAACTACTGCCGCAACA
AGGGCATCAAAACCTCGATTCGCGTTGGCGTCGTTGGAATTCCCAATGTA
GGCAAGAGCTCCATCATAAACTCGTTGACCCGCGGCCGGTCCTGCATGGT
GGGCAGCACGCCAGGAGTGACCAAGTCAATGCAAGAAGTAGAACTGGATT
CAAAAATCAAACTGATCGATTGTCCTGGAATCGTATTTACCAGCGGAGGT
GAAAATTCGCATGCAGTTCTGAAGAATGCTCAGCGTGTGGGCGATGTAAA
GGATCCTTTCACCATTGCCGAGAGCGTATTGAAGCGTGCCAGCAAGGAAT
ACTTCTGCACGATGTACGATATTACAAACTACGACACATTTGAAGAATTC
TTCGCCAAAAAGGCAGCCAGAATGGGCAAATTTCTAAAGAAGGGAGTTCC
AGATGTTGTGGCTGCCGCAAGAAGCGTGCTCAACGATTGGAACACGGGCA
AAATCAAATACTGCACACAGCCTCCGGAAGTTCAAGAAGGACAAAGTGTG
CATATAAGTGCCTCGATAGTACACTCAGAGGCTCGCGAATTTGATGTGGA
GAACTTTGAGTCCATGGAGACGGAAATCTTAGAGCATTGCGCCGTGAAAA
CGGATGACATTATGGAGATAACGTCTACGGGGCCTTTAGAGATTCGACAG
CCGCGTGAGGAAGCCGAACCTGCAGATAAAATAACTGCCAGTTTGGTAAT
AGACGAGAAGGAAAAGCCCGCAAAGGGTCGCAAACGAAAACTGGATGAGG
AAAAGGAGAAGGTTGATCCCAGTCTACTCCTAGAAGAAAACCAATCCCTG
AATAAAGGCATAAAGCAGATGCAAAAGCTAAAAAAGAAACAGAATGTTCG
CAACGAGAAGAAAATATCCAAAATTACAGACGTTCTGGATAGCTTTAGCT
TAGGTCCATCCTCGTCCAAGGCAGAAAAATACGATTTTGATGAGGACTAT
GTGATTGAATAAAAGCTTTCTAGACCAT
BS24948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns1-RA | 1746 | CG3983-PA | 1..1746 | 17..1762 | 8445 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns1-RA | 1895 | CG3983-RA | 73..1819 | 17..1763 | 8450 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17071630..17072517 | 926..39 | 4350 | 99.3 | Minus |
| 3R | 32079331 | 3R | 17070845..17071256 | 1586..1175 | 1970 | 98.5 | Minus |
| 3R | 32079331 | 3R | 17071318..17071568 | 1176..926 | 1180 | 98 | Minus |
| 3R | 32079331 | 3R | 17070599..17070777 | 1763..1585 | 880 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:05:56 has no hits.
BS24948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 13:46:07 Download gff for
BS24948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ns1-RA | 185..1928 | 17..1760 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:37 Download gff for
BS24948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns1-RA | 73..1816 | 17..1760 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:07 Download gff for
BS24948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns1-RA | 73..1816 | 17..1760 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:07 Download gff for
BS24948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17070602..17070775 | 1587..1760 | 99 | <- | Minus |
| 3R | 17070845..17071255 | 1176..1586 | 98 | <- | Minus |
| 3R | 17071319..17071569 | 925..1175 | 97 | <- | Minus |
| 3R | 17071632..17072517 | 39..924 | 99 | <- | Minus |
| 3R | 17072582..17072603 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:37 Download gff for
BS24948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12896324..12896497 | 1587..1760 | 99 | <- | Minus |
| arm_3R | 12896567..12896977 | 1176..1586 | 98 | <- | Minus |
| arm_3R | 12897041..12897291 | 925..1175 | 97 | <- | Minus |
| arm_3R | 12897354..12898239 | 39..924 | 99 | <- | Minus |
| arm_3R | 12898304..12898325 | 17..38 | 100 | | Minus |
BS24948.pep Sequence
Translation from 16 to 1761
> BS24948.pep
MALKRLKTKKSKRLTGRLKHKIEKKVRDHNKKERRAAKKNPKKGSKKQKL
IQIPNICPFKDDILKEVEEAKQRQEAERLARREAFKAEREQNKFKTLESM
VEDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSLKQYFKEFRKVIEN
ADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLN
NWIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAEL
LMSMLGNYCRNKGIKTSIRVGVVGIPNVGKSSIINSLTRGRSCMVGSTPG
VTKSMQEVELDSKIKLIDCPGIVFTSGGENSHAVLKNAQRVGDVKDPFTI
AESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAA
ARSVLNDWNTGKIKYCTQPPEVQEGQSVHISASIVHSEAREFDVENFESM
ETEILEHCAVKTDDIMEITSTGPLEIRQPREEAEPADKITASLVIDEKEK
PAKGRKRKLDEEKEKVDPSLLLEENQSLNKGIKQMQKLKKKQNVRNEKKI
SKITDVLDSFSLGPSSSKAEKYDFDEDYVIE*
BS24948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns1-PA | 581 | CG3983-PA | 1..581 | 1..581 | 2956 | 100 | Plus |
| Ns2-PA | 674 | CG6501-PA | 156..635 | 88..571 | 486 | 29.2 | Plus |
| Ns3-PB | 606 | CG14788-PB | 163..506 | 139..424 | 291 | 26.7 | Plus |
| Ns3-PA | 606 | CG14788-PA | 163..506 | 139..424 | 291 | 26.7 | Plus |
| Ns4-PA | 575 | CG9320-PA | 140..494 | 121..424 | 177 | 24.2 | Plus |
