BS24952.complete Sequence
1937 bp assembled on 2011-10-14
GenBank Submission: KX805825
> BS24952.complete
GAAGTTATCAGTCGACATGAAGAGAAAGCGAGTTGCTAGTCGTTTGTTCA
ACATTTTCCTTTTGGCGGTTCTGTGCTATCTAATATTGACTTCCCTTTCT
GATCGGAATAAAACGATTAGTATACGCGAAGTGCCCCAGATCTACATCAA
TGAGGAAGATGAACTCTTTGTCAACACCACGGGATGTCGAATAAGTGCGA
CGAAACCACTTTCGCTTTACGCCCTGTCCTTCATGGAGCCCATTGAACCC
GTTTTATGTAGAATGGAGCAGCTGATGGTCGCCGAGACAATTGGAGACAG
GAATTACTTGGTGCGTAACATATCGCGGCATGGGATTCTCTCCTGGAGGC
AAGTCTCCTGCATTTATCGGGAATTTGTGAGGGTCGATGACGCACACAAC
AAGTACATATCCTTGAAGTTTTTCAAGCTTACCGATCGAACGAGATACCT
TGAGGTGGGTACTGGTCTGCAACATATTCGCACTTGGTGCTGGGTAGACT
TTGGCAGGATCATATTCCACGACGTTATGTACTTCCTGCCACCACTGCCT
CAGGCTACGAACAGATCAACAGAACATCAGAAGAGAAAGCTGTCCGTGAT
GATCCTGGGAGTAGATTCTATCTCGCACATGCATTACATGCGTTACTTTC
ACCGCGTGGCCGACTTCATCGAGCACCTGCCCCACACCGAATTCTGGGGC
TATAATCGCGTCGCCTTGAACACCTATCCCAACTTGATCCCTCTGGTAAG
CGGACTTAGTGTTTCGGAGATGGAGGCGTCTTGCTACCATGACGAATTGA
ACTTTGACAAATGTAACTTCTTGTGGAATGAATTCAAGAGGGCGGGATAC
AGCACCATCTTTGCAGAGGACACGGATACCGCTGGGCTGTTTATCTACAG
AAAGAGGGGCTTTCAGAAGCAGCCCACCGATATTTACATGCGACCTCTGA
TGACTGAGATTGAATCTCATTCGCTCTACCGCACCACATTCGATTTAAAG
TGCACGGGTCATCGTCTCTATGGAGAGTTTTACTATGATTTCGTCTCCAA
GCTGATTCCGCACATGGAACGTCAGTTATTTTTCTCATTTTTGTGGAATA
TGCATGGCATACACGACGTCTTTCCATATGCCAAGTTTGTGGATAAGGAT
TACCTGAGTATTTTGACAAGGTTACACGAAAAGGGAGTGATGGAGAACAC
ATTGATACTGTTTATGGGTGATCACGGCCTGAGATTTGATAAATTCGCCC
GAACTGCTCCGGGACAACATGAAATGTCGCAGCCACTCTTGATCGCCATT
TATCCCGAATGGCTGAAAAGGAGATTTCCGCTCGCCATGTCGAATTTTGA
ACGAAACGCCAGAAGTCTCATTACCACATTCGATCTGCACGAAACCCTCA
AAGATGTGATCCATCTTGATCGGCTGACCGATGCCAATGTGAGGAATAGA
ACGCTTTATTTGACGAACGAGCGCGGAATCAGTCTGTTTTTACCCATTCC
TCAGAATCGAAATTGTAAAACCGCTGAGATAAAGCAACACTATTGCCTCT
GCAACGAACTTAAATCGGTATCCACCCACGAAAGTGCCATTCAAGAGGCT
GCCAGTTTCGCAGTGGACAGGATCAACGAGCTCATCAAGCCATATCCTCA
GTGTAGAGTTCTAAGCCTACAATCGGTTCGCACTGCCTACCGCGCCAAAA
GTAGTACCTACCGAGGAAACTACAGGGTGTCCCAGGTTATGGTCCGCTTG
AAAACGACGCCCGGCGATGGAAACTTCGATGCCACCGTTCTCATAACAAT
GCTTAATGGCGAAAAGACGGATATGAAGCTGGGAGGTCCTGTGACCAGGA
CAGACAGATACGCCCATCAGGCGTACTGCGTTCAAAACTATCGCATTGAA
ATGTACTGCTATTGCTTATGAAAGCTTTCTAGACCAT
BS24952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3123-RA | 1905 | CG3123-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3123-RA | 1961 | CG3123-RA | 3..1907 | 17..1921 | 9525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2823600..2825504 | 1921..17 | 9525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:42:49 has no hits.
BS24952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:09 Download gff for
BS24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3123-RA | 3..1906 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:30 Download gff for
BS24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3123-RA | 3..1906 | 17..1920 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:20 Download gff for
BS24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3123-RA | 3..1906 | 17..1920 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:20 Download gff for
BS24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2823601..2825504 | 17..1920 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:30 Download gff for
BS24952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2823601..2825504 | 17..1920 | 100 | | Minus |
BS24952.pep Sequence
Translation from 16 to 1920
> BS24952.pep
MKRKRVASRLFNIFLLAVLCYLILTSLSDRNKTISIREVPQIYINEEDEL
FVNTTGCRISATKPLSLYALSFMEPIEPVLCRMEQLMVAETIGDRNYLVR
NISRHGILSWRQVSCIYREFVRVDDAHNKYISLKFFKLTDRTRYLEVGTG
LQHIRTWCWVDFGRIIFHDVMYFLPPLPQATNRSTEHQKRKLSVMILGVD
SISHMHYMRYFHRVADFIEHLPHTEFWGYNRVALNTYPNLIPLVSGLSVS
EMEASCYHDELNFDKCNFLWNEFKRAGYSTIFAEDTDTAGLFIYRKRGFQ
KQPTDIYMRPLMTEIESHSLYRTTFDLKCTGHRLYGEFYYDFVSKLIPHM
ERQLFFSFLWNMHGIHDVFPYAKFVDKDYLSILTRLHEKGVMENTLILFM
GDHGLRFDKFARTAPGQHEMSQPLLIAIYPEWLKRRFPLAMSNFERNARS
LITTFDLHETLKDVIHLDRLTDANVRNRTLYLTNERGISLFLPIPQNRNC
KTAEIKQHYCLCNELKSVSTHESAIQEAASFAVDRINELIKPYPQCRVLS
LQSVRTAYRAKSSTYRGNYRVSQVMVRLKTTPGDGNFDATVLITMLNGEK
TDMKLGGPVTRTDRYAHQAYCVQNYRIEMYCYCL*
BS24952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3123-PA | 634 | CG3123-PA | 1..634 | 1..634 | 3372 | 100 | Plus |
| CG14731-PA | 641 | CG14731-PA | 13..640 | 12..633 | 1397 | 43.7 | Plus |
| CG1428-PA | 617 | CG1428-PA | 42..617 | 47..634 | 998 | 38 | Plus |
| CG16854-PC | 677 | CG16854-PC | 29..675 | 13..633 | 986 | 34.2 | Plus |
| CG16854-PB | 705 | CG16854-PB | 57..703 | 13..633 | 986 | 34.2 | Plus |
