BS24959.complete Sequence
938 bp assembled on 2011-06-27
GenBank Submission: KX803866
> BS24959.complete
GAAGTTATCAGTCGACATGTCTGATGTTGAAGTGGATCCACAGCAGGCTC
ACCCCCATCCCATAGCGGCAATTGCCCCGAGGAGACGTCGTCCAACCGGT
CGACGAGGAGGAGTAACAGGAGGGTTGTCGTCCGGTTCACTGGATGCATC
ATCTTCCACATCGCCGCCACCCCGTTTCTGTCCGCTGCCCAATGGCGTTG
AGGATAACTGGACGTGGAGCAAGCGGCACCGCTCCAAGGAAGTGGTGCTC
AGAGGACCCAACTCGCGGACCGTGCACTTCCATCCCAACTGGAGCAAGGG
CACTGCCGGTGTCCAGGGCAAAAGATCCCTGAATAACGGACGGCATTACT
GGGAGCTTCATGTCTCGCAGCGCGTCTTTGGCACCTCGATAATGTTCGGT
ATCGGTACCAAGTCGGCACGGCTACATGCCAACGCCTTCCGGAACATGCT
GGGCGAGAACGAACACGGCTGGGGACTGTCCCACAAGGGCGTGCTCTGGC
ACGAGGGCGTGGCCCTGCTGTACACGAAGCGGTTCCGCGAGAATCAACCC
ACCCAAATTGGCGTTCTCTTCGATGGCATTGAGGGCACACTCACCTTCTA
CAAGGATGGCAAGTGCCTGGGCGTTGCTTTCCGCGGATTGGATCAGATTG
ATGAGCCCCTGTACCCCATCGTATGCTCTACTGCCGCCAAAACGGAGATG
ACCCTAAAGTGCACCAGGAGGGAGTTCGTCAACCTACAGGATCGCTGTCG
GGCGGTGATCATGCGCCGCGTACGAAGCGCTGCGCAGCTGGAGAAGCTGA
AGCTGCCGCTGCCCATCGCCGACTATCTGAGCGAGGTGATCGACGAGAAG
AAGCCACTGCGTCAGGTGAATCAGCTGGAGATGTGCATTATGAATTACGA
TTTGTATGAGGCCCGTGAATGAAAGCTTTCTAGACCAT
BS24959.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP555-RC | 906 | CG14041-PC | 1..906 | 17..922 | 4530 | 100 | Plus |
| SP555-RA | 906 | CG14041-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
| SP555-RD | 882 | CG14041-PD | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP555-RC | 1396 | CG14041-RC | 45..950 | 17..922 | 4530 | 100 | Plus |
| SP555-RA | 2665 | CG14041-RA | 1314..2219 | 17..922 | 4530 | 100 | Plus |
| CG14042-RA | 2665 | CG14042-RA | 1314..2219 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5039111..5039740 | 17..646 | 3150 | 100 | Plus |
| 2L | 23513712 | 2L | 5039806..5040029 | 644..867 | 1120 | 100 | Plus |
| 2L | 23513712 | 2L | 5040117..5040176 | 863..922 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:40:50 has no hits.
BS24959.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:11 Download gff for
BS24959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14042-RA | 1059..1963 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:35 Download gff for
BS24959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP555-RA | 1059..1963 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:51 Download gff for
BS24959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14042-RA | 1314..2218 | 17..921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:51 Download gff for
BS24959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5039111..5039740 | 17..646 | 100 | -> | Plus |
| 2L | 5039809..5040027 | 647..865 | 100 | -> | Plus |
| 2L | 5040120..5040175 | 866..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:35 Download gff for
BS24959.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5040120..5040175 | 866..921 | 100 | | Plus |
| arm_2L | 5039809..5040027 | 647..865 | 100 | -> | Plus |
| arm_2L | 5039111..5039740 | 17..646 | 100 | -> | Plus |
BS24959.pep Sequence
Translation from 16 to 921
> BS24959.pep
MSDVEVDPQQAHPHPIAAIAPRRRRPTGRRGGVTGGLSSGSLDASSSTSP
PPRFCPLPNGVEDNWTWSKRHRSKEVVLRGPNSRTVHFHPNWSKGTAGVQ
GKRSLNNGRHYWELHVSQRVFGTSIMFGIGTKSARLHANAFRNMLGENEH
GWGLSHKGVLWHEGVALLYTKRFRENQPTQIGVLFDGIEGTLTFYKDGKC
LGVAFRGLDQIDEPLYPIVCSTAAKTEMTLKCTRREFVNLQDRCRAVIMR
RVRSAAQLEKLKLPLPIADYLSEVIDEKKPLRQVNQLEMCIMNYDLYEAR
E*
BS24959.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP555-PC | 301 | CG14041-PC | 1..301 | 1..301 | 1612 | 100 | Plus |
| SP555-PA | 301 | CG14041-PA | 1..301 | 1..301 | 1612 | 100 | Plus |
| SP555-PD | 293 | CG14041-PD | 1..289 | 1..296 | 1524 | 97 | Plus |
| SP555-PB | 293 | CG14041-PB | 1..289 | 1..296 | 1524 | 97 | Plus |
| CG10516-PA | 342 | CG10516-PA | 45..245 | 59..261 | 291 | 36.7 | Plus |
