BS24963.complete Sequence
831 bp assembled on 2011-06-27
GenBank Submission: KX804906
> BS24963.complete
GAAGTTATCAGTCGACATGATCACCTCGAAGCTGCGCCTGCGCCGAGCAC
AGATTCCCAGGTTTTCGATCACGAGTCGATGGTACAATTGGGGCAGCTAC
GATGCCAGCTCTGGGGAGTGCTGCAAGATGCGCGACAAGGATACCACGGC
CTGCAAGGATGGAAAGTGGTTCTGTCCGGTCAAGTACGAGCCCAACAAGT
GTTACGAGAAACCATCCTTTGCAGTAGAAGAATACTCCCAGTATCTGCAG
GAGATCTATAATCGAGGCAAGACCAATCCCGACTGCTTGCTGAAGCTGAT
CCGCCACGACGCTGAACATTACAAGCCGTCAGATAAGCAGCGCAAATTCC
AAAGGACTTGGCCAGAGTGTCCGCTCCTCTGGCTACGACCAAAGGACTAT
TGCTGTCCCGATCAGGAGGTATATCAGCCCATGAATCGTCGCATCCGCCC
CCCGCAGGAACCACCACTTTCGGCTATTGAAAAGCACCTCTTCCAGATGA
GTATCTTTTGCAAGTCCGTCAGGGCTCCCTGTTGTAAAGTAGGTCGACGT
CCGCCCAAATGCACCAAGCCGCGGAGGCCATCCGAATGCTGCAAGAAGTT
CACTCCGATGCCTAGTTTTTCGGAGGCCTGCCGCCATCTGATACCACGAT
TCTGTGGCTCCGAGTGTGCCTGTCGTGGAGGGAGCTTATGTGAAATGTGG
AACACGTATAATATGTGCAACAAGTCGCGCAGGAACTGCACCAAGCCGTT
AATAGGGTATTCTCCGTTACGATCCAGGATGCGATTTCCATTTTGAAAGC
TTTCTAGACCATTCGTGGGGCGCGAAGGCGG
BS24963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cola-RA | 780 | CG30363-PA | 1..780 | 17..796 | 3855 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swif-RB | 2074 | CG30366-RB | 56..846 | 16..806 | 3865 | 99.2 | Plus |
| cola-RA | 2074 | CG30363-RA | 56..846 | 16..806 | 3865 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8364500..8365290 | 806..16 | 3865 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:06 has no hits.
BS24963.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:12 Download gff for
BS24963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swif-RB | 57..846 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:54 Download gff for
BS24963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swif-RB | 57..846 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:37 Download gff for
BS24963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cola-RA | 57..846 | 17..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:37 Download gff for
BS24963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8364500..8365289 | 17..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:54 Download gff for
BS24963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4252005..4252794 | 17..806 | 99 | | Minus |
BS24963.pep Sequence
Translation from 16 to 795
> BS24963.pep
MITSKLRLRRAQIPRFSITSRWYNWGSYDASSGECCKMRDKDTTACKDGK
WFCPVKYEPNKCYEKPSFAVEEYSQYLQEIYNRGKTNPDCLLKLIRHDAE
HYKPSDKQRKFQRTWPECPLLWLRPKDYCCPDQEVYQPMNRRIRPPQEPP
LSAIEKHLFQMSIFCKSVRAPCCKVGRRPPKCTKPRRPSECCKKFTPMPS
FSEACRHLIPRFCGSECACRGGSLCEMWNTYNMCNKSRRNCTKPLIGYSP
LRSRMRFPF*
BS24963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cola-PA | 259 | CG30363-PA | 1..259 | 1..259 | 1486 | 100 | Plus |
| CG2127-PB | 289 | CG2127-PB | 127..269 | 95..228 | 239 | 38.5 | Plus |
| CG2127-PA | 305 | CG2127-PA | 143..285 | 95..228 | 239 | 38.5 | Plus |
| CG33340-PA | 229 | CG33340-PA | 85..218 | 96..228 | 201 | 37.5 | Plus |
| swif-PB | 284 | CG30366-PB | 81..263 | 34..219 | 183 | 30.6 | Plus |
