BS24965.complete Sequence
880 bp assembled on 2011-06-27
GenBank Submission: KX805707
> BS24965.complete
GAAGTTATCAGTCGACATGAACCAATACTTTTTGACGGGCTTGCTTTTGG
TGCTAGGAGTAGTACTACATATAGACTGGACAACAGCCAAACCTCCGGCG
AAAAAGGCGGATCAGCTGCCATCCTTTCTTAAGGTATGCCATCGCAATGC
ACCCGACCTAGACACCTGTGTTCGAGAATCTTATGAGGAACTACGTCCAA
GGCTTATGGAAGGTATACCAGAGCTATATATACCTGCCATGGAGCCGCTG
GTTGTTCCTCAGGTCAAGATGGACCAGGACTCCGGGGCCATATATTTGCA
CTCAGTGTACCGAAATGTCAAAGTCACAGGCATCTCAAAGCACACGGTCA
ATGAGCTGCGTCTGGAGCCTTCAAAACTCAAGTTCATTTTGTCTCTGACC
TTCCCAAAGCTGCATATGGAATCGGACTACAGCATTAAGGGAAAAATTAT
GATGATGCCACTTTTGGGCGATGGCCACTGTAAGGTGGATCTCGTTAACA
TCACCATGCGAACCGAGCTGATTGGACAGGAGTACAAAAAGAATGGAGCC
AACTTTTTGAAGATCAACACTGTGAAGGTCAAGTACGAGCTATCTGATGT
CCACATTCATCTGGATAACCTTTTCAACGGGGATAAAGCTTTGGGTGATC
GCATGAATGAGTTCCTCAACGAGAACTGGAAGGCACTGGCCGAGGAAGTG
CGTCCGTTGATGACCAAGGCGCTGGTGGACATTTTGAGGGCCTCCGTGGA
TAAATTGTTTGCTTCTTTTAGCTACGATGATCTGCTTCCCATGTAAAAGC
TTTCTAGACCATTCGTTTGGCGCGTAAGGGGCAGGTAAGTGGTCGATAAT
CTATAATCTATAATCCTATTAAATTCCAAT
BS24965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10407-RB | 780 | CG10407-PB | 1..780 | 17..796 | 3840 | 99.5 | Plus |
| CG10407-RA | 780 | CG10407-PA | 1..780 | 17..796 | 3840 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10407-RB | 1113 | CG10407-RB | 222..1003 | 17..798 | 3850 | 99.5 | Plus |
| CG10407-RA | 954 | CG10407-RA | 63..844 | 17..798 | 3850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16045354..16045674 | 440..120 | 1590 | 99.7 | Minus |
| 3R | 32079331 | 3R | 16044857..16045161 | 798..494 | 1480 | 99 | Minus |
| 3R | 32079331 | 3R | 16045807..16045909 | 119..17 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 16045217..16045277 | 498..438 | 290 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:48 has no hits.
BS24965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:13 Download gff for
BS24965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10407-RA | 63..851 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:02 Download gff for
BS24965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10407-RA | 63..851 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:53 Download gff for
BS24965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10407-RA | 63..851 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:53 Download gff for
BS24965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16045807..16045909 | 17..119 | 100 | | Minus |
| 3R | 16045221..16045275 | 440..494 | 100 | <- | Minus |
| 3R | 16045355..16045674 | 120..439 | 99 | <- | Minus |
| 3R | 16044857..16045160 | 495..798 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:02 Download gff for
BS24965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11870579..11870882 | 495..798 | 99 | <- | Minus |
| arm_3R | 11870943..11870997 | 440..494 | 100 | <- | Minus |
| arm_3R | 11871077..11871396 | 120..439 | 99 | <- | Minus |
| arm_3R | 11871529..11871631 | 17..119 | 100 | | Minus |
BS24965.pep Sequence
Translation from 16 to 795
> BS24965.pep
MNQYFLTGLLLVLGVVLHIDWTTAKPPAKKADQLPSFLKVCHRNAPDLDT
CVRESYEELRPRLMEGIPELYIPAMEPLVVPQVKMDQDSGAIYLHSVYRN
VKVTGISKHTVNELRLEPSKLKFILSLTFPKLHMESDYSIKGKIMMMPLL
GDGHCKVDLVNITMRTELIGQEYKKNGANFLKINTVKVKYELSDVHIHLD
NLFNGDKALGDRMNEFLNENWKALAEEVRPLMTKALVDILRASVDKLFAS
FSYDDLLPM*
BS24965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10407-PB | 259 | CG10407-PB | 1..259 | 1..259 | 1344 | 100 | Plus |
| CG10407-PA | 259 | CG10407-PA | 1..259 | 1..259 | 1344 | 100 | Plus |
| CG10264-PA | 270 | CG10264-PA | 45..261 | 35..249 | 337 | 32.3 | Plus |
| CG13618-PA | 252 | CG13618-PA | 1..249 | 1..256 | 326 | 30.7 | Plus |
| CG14661-PB | 246 | CG14661-PB | 20..246 | 31..259 | 319 | 28.4 | Plus |
