BS24966.complete Sequence
518 bp assembled on 2011-06-27
GenBank Submission: KX804225
> BS24966.complete
GAAGTTATCAGTCGACATGTATTCTCCCAAACTTCTAGAACTACGTAGCG
CATTTCGGCGAGCTTTTGTAGTCGGAATGTCATCCAAACCTCAGTACACC
CTAAGCGAAGTGGATGGGGATCTGTTTTCCGCCCCCAAGACCTATTCCTT
GGCGCACTGTGTGGGCGCAGATCTTGCGATGGGTGCTGGAATTGCCGTGC
AGTTCAAGAAGGTATTCGGAAGGTTGGACGAGCTGCAAGCCCAACAAGCG
GGCAGTGGAGATATTGCGGTGCTGAAGGATGACCAGCGGTACATTTACTA
CCTAGTAACCAAGCCTCAGAGCTGGGGAAAGCCCACCTACGAATCTGTAC
AAGCATCTTTGGAGCAGATGCGTGAGCATATGCGCAAAAACAACGTGAAT
AAGCTGGCCATCCCAAAAATTGGCTGCGGAATTGATGGCTTGGAATGGGA
AAAAGTCAGCGGAGTCCTCGAGGAAAATAATGGATCGTTTAGTTTAATAT
GAAAGCTTTCTAGACCAT
BS24966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33054-RB | 486 | CG33054-PB | 1..486 | 17..502 | 2430 | 100 | Plus |
| CG33054-RA | 462 | CG33054-PA | 1..396 | 77..472 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33054-RB | 580 | CG33054-RB | 46..531 | 17..502 | 2430 | 100 | Plus |
| CG33054-RA | 706 | CG33054-RA | 128..569 | 31..472 | 2180 | 99.5 | Plus |
| CG34261-RB | 796 | CG34261-RB | 606..696 | 472..382 | 455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21197760..21198125 | 382..17 | 1830 | 100 | Minus |
| 3L | 28110227 | 3L | 21197548..21197638 | 472..382 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:44:49 has no hits.
BS24966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:14 Download gff for
BS24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33054-RB | 48..532 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:14 Download gff for
BS24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33054-RB | 46..530 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:13 Download gff for
BS24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33054-RB | 46..530 | 17..501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:13 Download gff for
BS24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21197461..21197490 | 472..501 | 100 | <- | Minus |
| 3L | 21197549..21197637 | 383..471 | 100 | <- | Minus |
| 3L | 21197760..21198125 | 17..382 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:14 Download gff for
BS24966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21190561..21190590 | 472..501 | 100 | <- | Minus |
| arm_3L | 21190649..21190737 | 383..471 | 100 | <- | Minus |
| arm_3L | 21190860..21191225 | 17..382 | 100 | | Minus |
BS24966.pep Sequence
Translation from 16 to 501
> BS24966.pep
MYSPKLLELRSAFRRAFVVGMSSKPQYTLSEVDGDLFSAPKTYSLAHCVG
ADLAMGAGIAVQFKKVFGRLDELQAQQAGSGDIAVLKDDQRYIYYLVTKP
QSWGKPTYESVQASLEQMREHMRKNNVNKLAIPKIGCGIDGLEWEKVSGV
LEENNGSFSLI*
BS24966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33054-PB | 161 | CG33054-PB | 1..161 | 1..161 | 828 | 100 | Plus |
| CG33054-PA | 153 | CG33054-PA | 1..132 | 21..152 | 685 | 100 | Plus |
| CG34261-PB | 148 | CG34261-PB | 5..128 | 28..151 | 384 | 56.5 | Plus |
| CG33056-PC | 320 | CG33056-PC | 134..261 | 25..152 | 332 | 50.8 | Plus |
| CG33056-PE | 343 | CG33056-PE | 157..284 | 25..152 | 332 | 50.8 | Plus |
| CG33056-PC | 320 | CG33056-PC | 12..100 | 35..122 | 189 | 46.1 | Plus |
