Clone BS24968 Report

Search the DGRC for BS24968

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG9016-RA
Protein status:BS24968.pep: full length peptide match
Sequenced Size:290

Clone Sequence Records

BS24968.complete Sequence

290 bp assembled on 2011-06-27

GenBank Submission: KX803903

> BS24968.complete
GAAGTTATCAGTCGACATGGACGGCTTCTACAGCAACAGCAACAGTTGCA
GCAACAACGGCGGCTACTGCTCGCAGGGTTCGCGAAGTGGCAACTGCGGA
TCGTGTGGCAACTGCCCCGGTGGCCACTGCCCCCGAATGGAGGCGGGTGG
TAGTAGCTACGGCGCTCGAGGAATGAGCCAGCCGGGTTGTCCTGGCGGCA
ACTGTTGTCCCGGCGGAAGGTGTTCGGCCGGAAAGTCGCGCTTCAATCCA
GACTGGCAGTATGGTGGACGCTAGAAGCTTTCTAGACCAT

BS24968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9016-RB 258 CG9016-PB 1..258 17..274 1290 100 Plus
CG9016-RA 258 CG9016-PA 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9016-RB 719 CG9016-RB 123..381 16..274 1295 100 Plus
CG9016-RA 724 CG9016-RA 128..386 16..274 1295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5923214..5923472 274..16 1295 100 Minus
Blast to na_te.dros performed 2014-11-26 15:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1114..1164 21..71 129 72.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2485 22..71 124 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2374..2424 7..58 122 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2415 28..64 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6824 31..97 120 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6779 31..70 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2576..2628 8..58 116 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6815 31..64 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2613..2658 25..67 115 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6854 31..70 110 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6836 31..64 107 79.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2883 1..127 106 57.8 Plus
roo 9092 roo DM_ROO 9092bp 1059..1120 35..99 101 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1575 31..61 101 80.6 Plus
roo 9092 roo DM_ROO 9092bp 1097..1139 31..70 100 74.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6871..6917 21..67 100 68.1 Plus

BS24968.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:15 Download gff for BS24968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9016-RA 122..379 17..274 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:18 Download gff for BS24968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9016-RA 129..386 17..274 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:24 Download gff for BS24968.complete
Subject Subject Range Query Range Percent Splice Strand
CG9016-RA 129..386 17..274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:24 Download gff for BS24968.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5923214..5923471 17..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:18 Download gff for BS24968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5923214..5923471 17..274 100   Minus

BS24968.pep Sequence

Translation from 16 to 273

> BS24968.pep
MDGFYSNSNSCSNNGGYCSQGSRSGNCGSCGNCPGGHCPRMEAGGSSYGA
RGMSQPGCPGGNCCPGGRCSAGKSRFNPDWQYGGR*

BS24968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9016-PB 85 CG9016-PB 1..85 1..85 511 100 Plus
CG9016-PA 85 CG9016-PA 1..85 1..85 511 100 Plus