BS24971.complete Sequence
1904 bp assembled on 2011-07-19
GenBank Submission: KX802017
> BS24971.complete
GAAGTTATCAGTCGACATGTCGAACGCTAAGCTGGACAGTAAGGTCGTTC
AGAACCTGAAGGACGTGGCCCAAAAGCTGCGGATCCACTCGATCACCTCG
ACGCAGGCGGCCAAGTCGGGACATCCGACGTCCTGTGCCTCGTTGGCCGA
GATAATGACGGTGCTGTTCTTTCAGCAGATGCGCCTAAATCTGAAGCATC
CTCGCGATCCTTCCAGCGATCGATTGGTTCTGTCCAAGGGACATGCTGCA
CCCATTCTGTACGCCGTTTGGGCGGAGGCTGGACTCTTCCCGGTGGAGGA
GCTGCGAAATTTGCGCAAGGTGGACAGTGATCTAGAGGGTCATCCCACTC
CACGGCTGAGTTTCGTCGATGTGAGCACCGGATCCCTGGGACAGGGCATC
TCCGTGGCCGCTGGAATGGCCTATGTGGGCAAACACCTGGACAAGGCCGA
CTATCGTACATATGTGATCGTGGGCGATGGCGAGGCTACCGAAGGAGCAG
TCTGGGAATCGCTCCACTTTGCCGGCCACTACTGCCTGGACAACCTGTGC
GTAATCTTCGATATGAACAAGATCTTCTGCTCGGACATAGGCACTGAAAT
GGAGGTTTATCGGGAGAGGTTGGACGCCTTCGGGTTCAATGCCCTAGTCT
TAAATGGCCACGATATTGATGAGCTGGCCAAGGCCTTCATTAATGCGGCC
AGCACGAAGGGTAAGCCCACGGCTCTTTTAGCCAGGACGACTAAGGGAAA
GGACTTTCTGGGCATCGAAGGAATCGAAGAAATGCATGCACAGCCACTGG
GTAAGAGGGCCGAATCTGCAATCAAGCATTTGCAGATGAAAATCGCAAAT
CCCAACGTCCGCCTGACACCCAAAAAGGTGGGAAAGTGCGGCCACGCCCC
CGAGGTGCATATTAACAATATAATGCTGTGCAGTCCGCCCAATTATCGGC
TGGGAGATTCGGTAGCCCCACGCTTAGCCTACGGAACCGCCTTGGCCAAA
ATCGCTGCTGATAATCCTCGGGTAATAGCCCTTGATGGCGATACAAAGAA
CTCGACATATGCGGACAAAATGAGGAATGCATTTCCAGAGCGTTTCATCG
AGTGCTTCACAGCACAGCAGAATCTGGTGGGCGTGGCCGTGGGAGCCACC
TGTCGACGTCGCACTGTGGCCTTCGTTTCGACGTATGCGACCTTTTTCAC
ACGGGCCTTTGATCAGATCCGCATGGGCGCAATTTCGCACACGAATGTGA
ACTTCGCGGGCTCCCACTGTGGCTGCAGCATCGGCGAGGATGGTCCCTCC
CAAATGGGACTGGAGGACATGGCCATGTTCAGGAGCATTCCCGGGAGCAC
GGTCTTCTATCCCACGGACGCAGTGAGCACGGAGAGGGCGGTGGAACTGG
CTGCCAATACTAAGGGCGTGTGCTACATCCGCACCACGTATCCGAGCACA
ACGGTGATCTACAACAATGACGAGGTGTTTGCCGTGGGACTGGGCAAAGT
GGTGCGCCAGAAGCCCTCGGATGAGGTGCTCCTGATTGGAGCCGGCGTCA
CATTGTACGAGTGCCTGGCCGCAGCGGAAAGATTGGAGGAGGATTGCATT
ACGGCACGAGTGATCGACCCCTTTACAGTGAAGCCCCTCGATGTCGGATT
AATCGTGAAGCATGGAAAGCTGTGTCGTGGAAGAATCGTCGTGGTGGAGG
ATCATTACCAGCAAGGCGGATTGGGCGAGGCGGTCCTCAGTGCTCTGGCC
GACTATCGAAACTTTGTGGTCAAGCATCTCTATATTACCACTGTACCGAG
ATCAGGCCCTCCTGCTGTTCTGCTGGACATGTTTGGCGTCTCCTCCAGAA
ATATATACAAAGCAAGCCTGGCCATCATGAAGAAGTGAAAGCTTTCTAGA
CCAT
BS24971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5103-RA | 1872 | CG5103-PA | 1..1872 | 17..1888 | 9105 | 99.1 | Plus |
| CG8036-RD | 1743 | CG8036-PD | 944..1631 | 1089..1776 | 1070 | 77 | Plus |
| CG8036-RC | 1881 | CG8036-PC | 1082..1769 | 1089..1776 | 1070 | 77 | Plus |
| CG8036-RD | 1743 | CG8036-PD | 7..414 | 161..568 | 855 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5103-RA | 2074 | CG5103-RA | 35..1906 | 17..1888 | 9105 | 99.1 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 1233..1920 | 1089..1776 | 1070 | 77 | Plus |
| CG8036-RC | 2235 | CG8036-RC | 1289..1976 | 1089..1776 | 1070 | 77 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 257..703 | 122..568 | 915 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18292293..18293348 | 1888..833 | 5085 | 98.8 | Minus |
| 3L | 28110227 | 3L | 18293410..18294228 | 835..17 | 4035 | 99.5 | Minus |
| 3R | 32079331 | 3R | 8672688..8673314 | 1089..1715 | 990 | 77.2 | Plus |
| 3R | 32079331 | 3R | 8671712..8672158 | 122..568 | 915 | 80.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:57:32 has no hits.
BS24971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-19 10:53:23 Download gff for
BS24971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5103-RA | 218..2088 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:04 Download gff for
BS24971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5103-RA | 35..1905 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:00 Download gff for
BS24971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5103-RA | 35..1905 | 17..1887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:00 Download gff for
BS24971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18292294..18293345 | 836..1887 | 98 | <- | Minus |
| 3L | 18293410..18294228 | 17..835 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:04 Download gff for
BS24971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18285394..18286445 | 836..1887 | 98 | <- | Minus |
| arm_3L | 18286510..18287328 | 17..835 | 99 | | Minus |
BS24971.pep Sequence
Translation from 16 to 1887
> BS24971.pep
MSNAKLDSKVVQNLKDVAQKLRIHSITSTQAAKSGHPTSCASLAEIMTVL
FFQQMRLNLKHPRDPSSDRLVLSKGHAAPILYAVWAEAGLFPVEELRNLR
KVDSDLEGHPTPRLSFVDVSTGSLGQGISVAAGMAYVGKHLDKADYRTYV
IVGDGEATEGAVWESLHFAGHYCLDNLCVIFDMNKIFCSDIGTEMEVYRE
RLDAFGFNALVLNGHDIDELAKAFINAASTKGKPTALLARTTKGKDFLGI
EGIEEMHAQPLGKRAESAIKHLQMKIANPNVRLTPKKVGKCGHAPEVHIN
NIMLCSPPNYRLGDSVAPRLAYGTALAKIAADNPRVIALDGDTKNSTYAD
KMRNAFPERFIECFTAQQNLVGVAVGATCRRRTVAFVSTYATFFTRAFDQ
IRMGAISHTNVNFAGSHCGCSIGEDGPSQMGLEDMAMFRSIPGSTVFYPT
DAVSTERAVELAANTKGVCYIRTTYPSTTVIYNNDEVFAVGLGKVVRQKP
SDEVLLIGAGVTLYECLAAAERLEEDCITARVIDPFTVKPLDVGLIVKHG
KLCRGRIVVVEDHYQQGGLGEAVLSALADYRNFVVKHLYITTVPRSGPPA
VLLDMFGVSSRNIYKASLAIMKK*
BS24971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5103-PA | 623 | CG5103-PA | 1..623 | 1..623 | 3218 | 100 | Plus |
| CG8036-PC | 626 | CG8036-PC | 1..625 | 1..622 | 2463 | 73.6 | Plus |
| CG8036-PB | 626 | CG8036-PB | 1..625 | 1..622 | 2463 | 73.6 | Plus |
| CG8036-PD | 580 | CG8036-PD | 1..579 | 47..622 | 2292 | 73.6 | Plus |
