BS24976.complete Sequence
2054 bp assembled on 2011-08-31
GenBank Submission: KX806452
> BS24976.complete
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGT
TTCCGCCGCAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAA
TGCCATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGT
CGGCGGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGC
GAACAGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGG
GATTGGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATG
CGCCTGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAA
GAGCCGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCC
AGCTTAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAAC
TCCAACTCGGATGACCAAGACGCCACCACATCCCTGGAAGACAACTCGCA
CGCCCAGTCCCTAGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGA
CCAAGGCCAAGCACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGAC
ACCCTGGAGAAGGACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGA
TGTGGCTGGGCTCAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGC
TTCCGGTAATCATGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGT
GGAGTGTTGATGGTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAA
GGCGGTGGCCACAGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGA
CCCTGACCTCGAAATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTG
TTCGAGATGGCCCGATTTTATGCGCCCAGCACCATTTTCATCGACGAGAT
AGACGCCCTATGCGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTC
GGCGGTTCAAGGCCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGC
ATGCAGGAGGAGAAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTG
GGACATCGATGAGGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTC
CTCTCCCAAACGAGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAG
GACGTATGCCTGTCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACT
GCAGGGCTACTCGGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCA
TGATGGCCATGCGGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAG
CAAATCCGACGCGAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCA
GGACGCCCGTCTGCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCC
GCTTCGAAAAGTGGATGGAGGAATACGGGTCGTGCTAGAAGCTTTCTAGA
CCAT
BS24976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-RG | 2022 | CG1193-PG | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| kat-60L1-RE | 2022 | CG1193-PE | 1..2022 | 17..2038 | 10110 | 100 | Plus |
| kat-60L1-RC | 2010 | CG1193-PC | 1..2010 | 17..2038 | 9895 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-RG | 2479 | CG1193-RG | 112..2134 | 16..2038 | 10115 | 100 | Plus |
| kat-60L1-RE | 2350 | CG1193-RE | 112..2134 | 16..2038 | 10115 | 100 | Plus |
| kat-60L1-RC | 2338 | CG1193-RC | 112..2122 | 16..2038 | 9900 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5785428..5786068 | 598..1238 | 3205 | 100 | Plus |
| 3R | 32079331 | 3R | 5786263..5786739 | 1236..1712 | 2385 | 100 | Plus |
| 3R | 32079331 | 3R | 5786794..5787120 | 1712..2038 | 1635 | 100 | Plus |
| 3R | 32079331 | 3R | 5783216..5783530 | 16..330 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 5785112..5785381 | 330..599 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 5228408..5228838 | 1708..1278 | 565 | 75.4 | Minus |
Blast to na_te.dros performed 2014-11-27 01:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 701..781 | 120 | 64.2 | Plus |
BS24976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:39 Download gff for
BS24976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RG | 118..2134 | 22..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:08 Download gff for
BS24976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RE | 118..2134 | 22..2038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:50 Download gff for
BS24976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RE | 118..2134 | 22..2038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:50 Download gff for
BS24976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5783222..5783530 | 22..330 | 100 | -> | Plus |
| 3R | 5785113..5785381 | 331..599 | 100 | -> | Plus |
| 3R | 5785430..5786067 | 600..1237 | 100 | -> | Plus |
| 3R | 5786265..5786739 | 1238..1712 | 100 | -> | Plus |
| 3R | 5786795..5787120 | 1713..2038 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:08 Download gff for
BS24976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1608944..1609252 | 22..330 | 100 | -> | Plus |
| arm_3R | 1610835..1611103 | 331..599 | 100 | -> | Plus |
| arm_3R | 1611152..1611789 | 600..1237 | 100 | -> | Plus |
| arm_3R | 1611987..1612461 | 1238..1712 | 100 | -> | Plus |
| arm_3R | 1612517..1612842 | 1713..2038 | 100 | | Plus |
BS24976.pep Sequence
Translation from 16 to 2037
> BS24976.pep
MFNTSAQNWFGMGQTAVDPSGGVAQLLNNNSSLYNQQQQQAAAAQHSFMR
QRSLTSSNPVLGRSNALATRPQSPPNVQVEYEVAVPFVPTYRHTPYHSLW
DLHQCSSTPPTSLSHMARMMDSLILDSLSPFGFTKITATSRPSRNASLKK
SSEGGHSSTAERHRPVNNLGSNAPGGLGIGGSVPLRSKQRLPTQVSAAEV
APQPRASQTAQMPFPSQQQDNRWVSSLRRRDPELQPTLPSINSNANSSSL
SQSHHGSAGNVGLAGAGAPTPAASMGTMRLGRPARASAMTAALRKSRSVE
RLRARKLSTNTQLNLKHKPVKKNSLDENSNSDDQDATTSLEDNSHAQSLA
TSHNTPKCSPKTKAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLN
EAKTILQEAVVLPVIMPEFFKGIRRPWRGVLMVGPPGTGKTMLAKAVATE
CGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCA
SRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEA
FRRRFEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSG
SDISNVCRDASMMAMRRLISGRTPDQIKQIRREEVDQPITLQDFQDARLR
TKKSVSADDVARFEKWMEEYGSC*
BS24976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-PG | 673 | CG1193-PG | 1..673 | 1..673 | 3467 | 100 | Plus |
| kat-60L1-PE | 673 | CG1193-PE | 1..673 | 1..673 | 3467 | 100 | Plus |
| kat-60L1-PC | 669 | CG1193-PC | 1..669 | 1..673 | 3436 | 99.4 | Plus |
| kat-60L1-PB | 669 | CG1193-PB | 1..669 | 1..673 | 3436 | 99.4 | Plus |
| kat-60L1-PH | 609 | CG1193-PH | 42..609 | 106..673 | 2907 | 100 | Plus |
