BS24979.complete Sequence
2699 bp assembled on 2011-08-04
GenBank Submission: KX805611
> BS24979.complete
GAAGTTATCAGTCGACATGGAGCTATCGCTGTCACCAAAAGAAACGGAGA
TCCGTCCCAACACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAG
GTGGCTAAACATGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCG
CCTGGAGGCGGTACAAAGATCACATTATGGCACCTTCTACGATAGCTGCG
CCTACATTATCTATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAA
ACCATCACACGCGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCA
CTACTGGCTGGGCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTC
ATAAAATCCAGGAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTAC
CGAGAGACCCAGAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAA
GGGTTACGATGTTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCAC
GACTTTTTCAATTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCC
ACCATCGATTGGTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAAC
GGATAATCTTACCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAAC
GACGAAGTGCCCTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATC
ACTATAGTCGATGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGA
GCTGTGGAACACCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGGCCA
GTCAGTTGGTCAGCGAATACGCCGACTACAATAGCAATAAGTTCCGCATC
TATAAGTGCAATCAACGGGGAAGGCTGCACCTGGATCAATTGGATGTGGG
CATGCCAGCAAAAGATGATCTAAGCGATGCCCATGGAGTCTATTTACTGG
ACAACTACGGCCAGAGTATTTGGTTGTGGGTAGGAGGCCAGGCACCGCAG
GCAGATGCCCTTTCTGCCATGGGAAATGGGAGAGCTTTTGTTAAAAAGAA
GAAATATCCGGATAATACGTTGGTGGTGCGTGTCCTCGAGGGTCACGAGC
CCGTGGAGTTTAAGCGTCTCTTTGCCAACTGGTTAAATGTTTGGCAGGAG
AACACCAGGGGACATAAGCCAGTGTCCACAAAGTTTGGAAAGCTAGATGC
CCATTCCCTATGCGAACGCCCTAAAATGGCTGCAGATACACAGCTCGTTG
ATGATGGCAGGGGTGAAAGAGTAATCTATCGTGTCTTCGGAGATCAGGTG
CAAGAGGTGCCCATCTCAAAAACGGTTGTGTTCACCACCAATGCCAGTTT
CGTGGTCAAGTACAGCGTGCAGTGCGCCACCGTTGTTCCCGCAGATTTGG
CCTCCGTTGGCATTAAAACAATCATCTACCAGTGGAATGGTTCGGAGGCC
TCTGTAGAGTCCATTTCCCGGGCGGACAAGTTCGCCAAGGCCAGTTTTGA
TGGGCTCAAGGAGCCTGGAATGTTTGTACAGCTCTATGAGTTCGATGAAC
CACCGCACTTCCTTCAGATCTTCGAGGGAAAACTTATTATCAGGCGCGGT
CAGCGTACCGAGATGCCTTACAATGGTAACTCCAATGCCTTGCTGGACAC
CTTTCTGCTGAAAGTTTATGGCGATGCTAGCTACAATGCCAAGGCTGTGG
AGGAGACACATCTGTCATCGATCAGCTCCAAAGATTGCTATGTGATCAAA
ACGAATCATGTTTGGGTGTGGTGCGGGCAAAGTAGCACGGGAGATGCCCG
CGAGATGGCCAAAGCAGTGGGAGCTCTGATGGGGGAAAACTCTCTGGTCC
TCGAAGGCAAGGAAAGTAAGGAGTTCTGGCAATCGGTGGCCATGTACTTC
AACCAAACTCTAGTGATCAACGGAAATGGGAACTCATGTTCCAGCAGCAC
CAGTAGCAGCAGTGGCGCCGGCAGCATGTGCAATGGTAGCTCCAATGGTG
GTAACATTTCACCCACTCTCAGCAATAATTGTTACCTAAACACCAGTGTT
CCGAGTAAACCGAGACCTCCTGTACAACTATTTCTGGTATGGTGGCAACA
GAGTTCGCTGAGATACGAGGAGATTCTCGGATTCGATCAGCAGGATCTCA
GTTCGGATTGCACCTATATTCTGGACACTGGGAGCCTCACCTACGTCTGG
CTGGGATCGCAGGCCCCAAACCAGGAACGCTACACAGCGATTGCCCAAAG
TTATGTCCAAAATGCTCCATTCGGACGCAGATCAGCGACAGCGTTGGCCG
TGGTCAGGCAGTTTCAGGAGCCAAATGTTTTCAAGGGATTCTTCGAGTCC
TGGCAAAACGATTACGGCAAGAACTTCCATTCCTACGAGAAAATGCGCAA
GGATCTGGGAAATAAAGTGACCAGCAATTGTTGCTTCGCAAGCGAAGGAT
CGGCTCTAATCCTGAACAACAGACAGAAGGACTTTGATGGTCACAAAAAG
TATCCATTAACCGTGCTCATCCAGGAAATGGATATGCTGCCACCAGATAT
TAATCCGCTCAAGAGGGAGGTTCACCTAACACACGATGATTTTGTGTCAG
TGTTTAATATGTCCTTTTATGAATTTGACGAGCTGCCGAAATGGAAGAAA
ATGGAGCTGAAAAAGCAATTCAAGCTTTTTTAGAAGCTTTCTAGACCAT
BS24979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RB | 2667 | CG6433-PB | 1..2667 | 17..2683 | 13335 | 100 | Plus |
| qua-RA | 2664 | CG6433-PA | 27..2664 | 46..2683 | 13190 | 100 | Plus |
| qua-RC | 2679 | CG6433-PC | 1..2679 | 17..2683 | 13180 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RB | 3306 | CG6433-RB | 483..3152 | 15..2684 | 13350 | 100 | Plus |
| qua-RC | 3318 | CG6433-RC | 483..3164 | 15..2684 | 13195 | 99.6 | Plus |
| qua-RA | 3266 | CG6433-RA | 474..3112 | 46..2684 | 13195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17487402..17488403 | 2371..1370 | 5010 | 100 | Minus |
| 2L | 23513712 | 2L | 17488457..17489369 | 1372..460 | 4565 | 100 | Minus |
| 2L | 23513712 | 2L | 17489693..17489903 | 256..46 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 17489431..17489633 | 459..257 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 17487138..17487339 | 2571..2370 | 1010 | 100 | Minus |
| 2L | 23513712 | 2L | 17486960..17487076 | 2684..2568 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:03:41 has no hits.
BS24979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:38 Download gff for
BS24979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 479..3145 | 17..2683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:44 Download gff for
BS24979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 485..3151 | 17..2683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:30 Download gff for
BS24979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RB | 485..3151 | 17..2683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:30 Download gff for
BS24979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17486961..17487074 | 2570..2683 | 100 | <- | Minus |
| 2L | 17487140..17487337 | 2372..2569 | 100 | <- | Minus |
| 2L | 17487402..17488400 | 1373..2371 | 100 | <- | Minus |
| 2L | 17488457..17489369 | 460..1372 | 100 | <- | Minus |
| 2L | 17489431..17489633 | 257..459 | 100 | <- | Minus |
| 2L | 17489693..17489902 | 47..256 | 100 | <- | Minus |
| 2L | 17491802..17491831 | 17..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:44 Download gff for
BS24979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17486961..17487074 | 2570..2683 | 100 | <- | Minus |
| arm_2L | 17487140..17487337 | 2372..2569 | 100 | <- | Minus |
| arm_2L | 17487402..17488400 | 1373..2371 | 100 | <- | Minus |
| arm_2L | 17488457..17489369 | 460..1372 | 100 | <- | Minus |
| arm_2L | 17489431..17489633 | 257..459 | 100 | <- | Minus |
| arm_2L | 17489693..17489902 | 47..256 | 100 | <- | Minus |
| arm_2L | 17491802..17491831 | 17..46 | 100 | | Minus |
BS24979.pep Sequence
Translation from 16 to 2682
> BS24979.pep
MELSLSPKETEIRPNTIPDLKVDATFRKVAKHAITFAIWKIDEDRLEAVQ
RSHYGTFYDSCAYIIYAASLSGHYANHETITREQKPNVSLERYIHYWLGK
NVSEQNRSNVVHKIQELDSYLGNISSIYRETQNLESARFLSYFKKGYDVR
SGALISAPQRPRLFQLYARKWLRSIEVATIDWSHFNSDYVMVLQTDNLTY
VWIGRSSSGIERRSALDWVQKHCSGSPITIVDDGYEQAMSQEHKELWNTM
LPLKKRMVCQASQLVSEYADYNSNKFRIYKCNQRGRLHLDQLDVGMPAKD
DLSDAHGVYLLDNYGQSIWLWVGGQAPQADALSAMGNGRAFVKKKKYPDN
TLVVRVLEGHEPVEFKRLFANWLNVWQENTRGHKPVSTKFGKLDAHSLCE
RPKMAADTQLVDDGRGERVIYRVFGDQVQEVPISKTVVFTTNASFVVKYS
VQCATVVPADLASVGIKTIIYQWNGSEASVESISRADKFAKASFDGLKEP
GMFVQLYEFDEPPHFLQIFEGKLIIRRGQRTEMPYNGNSNALLDTFLLKV
YGDASYNAKAVEETHLSSISSKDCYVIKTNHVWVWCGQSSTGDAREMAKA
VGALMGENSLVLEGKESKEFWQSVAMYFNQTLVINGNGNSCSSSTSSSSG
AGSMCNGSSNGGNISPTLSNNCYLNTSVPSKPRPPVQLFLVWWQQSSLRY
EEILGFDQQDLSSDCTYILDTGSLTYVWLGSQAPNQERYTAIAQSYVQNA
PFGRRSATALAVVRQFQEPNVFKGFFESWQNDYGKNFHSYEKMRKDLGNK
VTSNCCFASEGSALILNNRQKDFDGHKKYPLTVLIQEMDMLPPDINPLKR
EVHLTHDDFVSVFNMSFYEFDELPKWKKMELKKQFKLF*
BS24979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-PB | 888 | CG6433-PB | 1..888 | 1..888 | 4699 | 100 | Plus |
| qua-PC | 892 | CG6433-PC | 1..892 | 1..888 | 4680 | 99.4 | Plus |
| qua-PA | 887 | CG6433-PA | 10..887 | 11..888 | 4651 | 100 | Plus |
| Gel-PL | 740 | CG1106-PL | 16..740 | 38..801 | 465 | 24.8 | Plus |
| Gel-PA | 740 | CG1106-PA | 16..740 | 38..801 | 465 | 24.8 | Plus |
