Clone BS24984 Report

Search the DGRC for BS24984

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG42675-RD
Protein status:BS24984.pep: full length peptide match
Sequenced Size:596

Clone Sequence Records

BS24984.complete Sequence

596 bp assembled on 2011-06-27

GenBank Submission: KX800572

> BS24984.complete
GAAGTTATCAGTCGACATGTCTGTTTCCAACAAGGCGGAACCCAAATCAC
CAGTTAAAAAGGTCAACATGGACACAACGACTGCAATCCCAGAGGGCACC
GCTTTATGCCGCTACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAA
GCACGAGGAGGTGTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCG
ATGCCTCCAAGCAGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATG
AAGTCGAAGGGCAATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCA
GAAGGGTCTGACCACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACG
AGGACTTCATTCAGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTG
GCGCGCGGCGGCAAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAA
TCCAGACTATGTCCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGG
CTGCGGAGCGTCATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCC
CGTAACGGTCCGCCGGCCAAGAGGCGTTGAAAGCTTTCTAGACCAT

BS24984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RD 564 CG42675-PD 1..564 17..580 2820 100 Plus
CG42675-RG 1284 CG42675-PG 738..1284 34..580 2735 100 Plus
CG42675-RF 1152 CG42675-PF 606..1152 34..580 2735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RD 644 CG42675-RD 19..582 17..580 2820 100 Plus
CG42675-RG 1448 CG42675-RG 840..1386 34..580 2735 100 Plus
CG42675-RF 1834 CG42675-RF 1226..1772 34..580 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5818248..5818758 70..580 2555 100 Plus
3R 32079331 3R 5818134..5818188 17..71 275 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:08 has no hits.

BS24984.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:15 Download gff for BS24984.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RD 19..581 17..579 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:35 Download gff for BS24984.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RD 19..581 17..579 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:05 Download gff for BS24984.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RD 19..581 17..579 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:05 Download gff for BS24984.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5818134..5818187 17..70 100 -> Plus
3R 5818249..5818757 71..579 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:35 Download gff for BS24984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1643856..1643909 17..70 100 -> Plus
arm_3R 1643971..1644479 71..579 100   Plus

BS24984.pep Sequence

Translation from 16 to 579

> BS24984.pep
MSVSNKAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVC
QRMLTTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTT
GVKKNNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQ
CPHCGRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRR*

BS24984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-PD 187 CG10999-PC 1..187 1..187 1004 100 Plus
CG42675-PF 383 CG42675-PF 202..383 6..187 978 99.5 Plus
CG42675-PC 383 CG10999-PB 202..383 6..187 978 99.5 Plus
CG42675-PB 383 CG10999-PA 202..383 6..187 978 99.5 Plus
CG42675-PE 412 CG42675-PE 231..412 6..187 978 99.5 Plus