Clone BS24991 Report

Search the DGRC for BS24991

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:249
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG18004-RB
Protein status:BS24991.pep: full length peptide match
Sequenced Size:908

Clone Sequence Records

BS24991.complete Sequence

908 bp assembled on 2011-06-28

GenBank Submission: KX805751

> BS24991.complete
GAAGTTATCAGTCGACATGAGATCCCTGGCCAACCAGGAGGATGGCGCCA
TAAAGGACGAGCCGCCGAGCGACGACGAGCCCGCACAGCCCGCCAGAGAT
CGCGTCCCGCCAATTTCCCGCGGAGCAGCGCCCGCTAGCTCATCCTCCGT
ATCCGCGGGCCTGGGCGCAGGCGAGACTGACTTCAAGGAGCGCTACAAGA
ACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGAGAACGAGTACTTCCAG
GATCTATTGCACACCAACCAGCGGCGTCTGCTGAAAGTTTCCCGGGATCG
TACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGCCAAGGACT
CTAGCGACTCGGATGCCACCGACAGCTCCGATTCGGAGCCAGCTTCTACG
TCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGACGCCATTCGGCGCAA
GCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCCGCACATGC
CCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAATCCTAACCGGAATG
TTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCGAAAAAACAACTTAC
CGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACTACAGACTGCACCGA
AGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTGCCCGCCAGCTGCAG
GAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCGGAATGCACTTCGGC
CACCGTGCCCACAACGATGCTCAGCGATGAAAGCCCCTCTAAGTGTTATC
CCAATGAAAGCCTGCAGCATCTGATGGAGGACGACTCTCACTCGCACGAG
GTGGCCGCCGAGGAGTGCGTGCCCATGGAGTACACAAGTTAAAAGCTTTC
TAGACCAT

BS24991.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RB 876 CG18004-PB 1..876 17..892 4365 99.9 Plus
CG18004-RA 894 CG18004-PA 22..894 20..892 4350 99.9 Plus
CG18004-RD 876 CG18004-PD 22..876 20..892 4045 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RB 1168 CG18004-RB 225..1100 17..892 4365 99.9 Plus
CG18004-RA 1044 CG18004-RA 104..976 20..892 4350 99.9 Plus
CG18004-RD 1026 CG18004-RD 104..958 20..892 4045 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10885590..10886152 233..795 2800 99.8 Plus
2R 25286936 2R 10885320..10885533 20..233 1070 100 Plus
2R 25286936 2R 10886210..10886307 795..892 490 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:21:51 has no hits.

BS24991.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:21:02 Download gff for BS24991.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 225..1098 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:59 Download gff for BS24991.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 225..1098 17..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:18 Download gff for BS24991.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 225..1098 17..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:18 Download gff for BS24991.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10885315..10885532 17..232 99 -> Plus
2R 10885590..10886152 233..795 99 -> Plus
2R 10886211..10886305 796..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:59 Download gff for BS24991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6772820..6773037 17..232 99 -> Plus
arm_2R 6773095..6773657 233..795 99 -> Plus
arm_2R 6773716..6773810 796..890 100   Plus

BS24991.pep Sequence

Translation from 16 to 891

> BS24991.pep
MRSLANQEDGAIKDEPPSDDEPAQPARDRVPPISRGAAPASSSSVSAGLG
AGETDFKERYKNLKKKLKFLIYENEYFQDLLHTNQRRLLKVSRDRTFLLD
RLLVYEKPAKDSSDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKG
APGIPGVPPHMPTVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSP
SQQPPQLQTAPKDVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTT
MLSDESPSKCYPNESLQHLMEDDSHSHEVAAEECVPMEYTS*

BS24991.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PB 291 CG18004-PB 1..291 1..291 1499 100 Plus
CG18004-PA 297 CG18004-PA 8..297 2..291 1494 100 Plus
CG18004-PD 291 CG18004-PD 8..291 2..291 1443 97.9 Plus