BS24995.complete Sequence
1025 bp assembled on 2011-06-28
GenBank Submission: KX800636
> BS24995.complete
GAAGTTATCAGTCGACATGGGAAGAAATTTCCTTCGTCTGCCCAGTGTGA
GTGGTAGAAGCTCATTCGTATATTCCATAGTCGCCTGTTCAAATCTTCCC
AAGCGACGGAGCATTGTGCTCAGTTTTGGCCACATTATGACCGAGAACAT
GACGCTCGAACAGCTGTCCGCAAATAAGTGCTTCGAGGGCGAGCAACGCG
TGTATCGCCATCGCTCGGACACCTTGAAGTGCGACATGACCTTTGGCGTC
TTCCTGCCGCCGGCCGCTTTGGAGGGTAAACCGTGTCCGGTGCTGTTCTT
CCTCAGCGGACTGACCTGCACGCATGAGAACTTCATCCAGAAGAGCGGAT
TCCAGCAGCACGCCGCCCGCCACAACCTGATCGTCGTCAATCCGGACACT
TCGCCCAGGGGCGTGGAAATTGCCGGCCAAGATGATGCATACGACTTTGG
AAGCGGGGCTGGATTCTATGTGGATGCAAAGGAGGAGCCGTGGTCGAAGC
ACTACAAGATGTACAGCTATGTGACCCAGGAGCTGGTGGATGTGGTCAAT
GCCAATCTGCCCGTGGTTCCCGGTAAACGCGGTATATTCGGCCACAGTAT
GGGCGGCCACGGAGCCCTGATCTGCGCGCTTAAGAATCCCGGGCTGTACC
AGTCGGTGTCCGCTTTTGCGCCGATTGCCAATCCCACCGAGTGCCCGTGG
GGCAAGAAGGCCTTTGCCGGCTATCTGGGCTCCAATCCGGATGACTGGGC
CCTGTGGGATGCCACGCATCTGGTGTCGCAGTACGAGAGCACTCCGCAGG
AGCTCTTCATCGACCAAGGTGCAGCAGACAACTTCCTGGCCGGCAAGCAG
CTGCTGCCGGAGAACCTGCTGGCTGCCGCAGATGGCAACGATCACATCCA
GACCATCTTCAAGCAGCGCGAGGGATACGATCACAGCTACTTCTACATCG
CCACGTTCGTCGCCGAACACATCGCCTACCATGCCGCCCTGCTCACAGCT
TCCGCTTGAAAGCTTTCTAGACCAT
BS24995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 993 | CG4390-PB | 1..993 | 17..1009 | 4950 | 99.9 | Plus |
| CG4390-RA | 861 | CG4390-PA | 1..861 | 149..1009 | 4290 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 1141 | CG4390-RB | 56..1048 | 17..1009 | 4950 | 99.9 | Plus |
| CG4390-RA | 1006 | CG4390-RA | 50..913 | 146..1009 | 4305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056511..20057376 | 1009..144 | 4315 | 99.9 | Minus |
| 3R | 32079331 | 3R | 20059567..20059695 | 145..17 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:14 has no hits.
BS24995.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:26:51 Download gff for
BS24995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 71..1062 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:08 Download gff for
BS24995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 71..1062 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:25 Download gff for
BS24995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 56..1047 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:25 Download gff for
BS24995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056512..20057374 | 146..1008 | 99 | <- | Minus |
| 3R | 20059567..20059695 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:08 Download gff for
BS24995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882234..15883096 | 146..1008 | 99 | <- | Minus |
| arm_3R | 15885289..15885417 | 17..145 | 100 | | Minus |
BS24995.pep Sequence
Translation from 16 to 1008
> BS24995.pep
MGRNFLRLPSVSGRSSFVYSIVACSNLPKRRSIVLSFGHIMTENMTLEQL
SANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGKPCPVLFFLSGLT
CTHENFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDFGSGAGF
YVDAKEEPWSKHYKMYSYVTQELVDVVNANLPVVPGKRGIFGHSMGGHGA
LICALKNPGLYQSVSAFAPIANPTECPWGKKAFAGYLGSNPDDWALWDAT
HLVSQYESTPQELFIDQGAADNFLAGKQLLPENLLAAADGNDHIQTIFKQ
REGYDHSYFYIATFVAEHIAYHAALLTASA*
BS24995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-PB | 330 | CG4390-PB | 1..330 | 1..330 | 1763 | 100 | Plus |
| CG4390-PA | 286 | CG4390-PA | 1..286 | 45..330 | 1541 | 100 | Plus |
