Clone BS25002 Report

Search the DGRC for BS25002

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:250
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG18128-RA
Protein status:BS25002.pep: full length peptide match
Sequenced Size:1052

Clone Sequence Records

BS25002.complete Sequence

1052 bp assembled on 2011-06-27

GenBank Submission: KX804350

> BS25002.complete
GAAGTTATCAGTCGACATGTGCAACTACGACTGCTGCAAGTCCAGGTCGC
CGATTGCCAAGCGAATGGCGGCCAGGAAGCTTCTGCAGATGGAGGAGGAG
GAACGCCGGAAGCCCAAGCTGGTCATCCCGACGCCCCAGAGCCTCTTCTA
CCCCTTCGAGGAAGTCGAGGCCATGGCCAAGTACATCGTGAACGTTAGCC
ACATCAGGCCAAAGTACGGACTAATCTGCGGCAGCTTCCTGAGCGATATG
GTCAGCTTGGTGGAGCAGCCGGTGGTCATTCCCTACGAGGACATACCCAA
CTTCCCCGACGGCATAGAGCCGGACTGCAGCTTCGTCTTGGGCACAGTCA
TGGGAGCACCCATAATAGCGCTGGTCCACAGTTTCCACTCCTGCGACGGC
TACAACCTGGCCACCTGTGCGCTGCCCGTCCGCGTGATGCAGTTGTGCGG
GGTCAGGACCATCATGCTGACCTCTGAAGCAGCGGCCGTAGATCACGGAT
TCGCCCTGGGCGACATAATGCTTGTCCAGGACCACATCAATGTGGTGGGC
ATGATGCACCAGACGCCGCTAGAGGGTCCCAGTGATCCGCGCTTTGGCAG
CCGCCGATTCTCGATGGTGAACGCATATGACAAGGACCTGCTGGAGAAGG
CACTCGAGATTGGCAAGCGAATGGGCATCCAGAAGTTCCTGCACAGCGGC
GTCTTAGCCTGCATGGGAGGTCCCATTCTCGGCACTGTGGCCGAGGAGCG
AATGCTGCGGACAATGGAGGTCAGTGCCGTGGGCATGTCCCTGGTGCCCG
AGGTTATAGCCGCCCACCACGGCGGCCTGAAGGTGCTCGCCTTTGTGGTT
ATCAGCAGGGCGGCCAGCGACAAGGAGAGCGAGGAGAGCGATAAGGACAA
GGAGAAGGACACTGACAGGGACTCCAAGCAGGATAAGCGAGAGCAGGATT
CCCAGGAGCCTGTCCCCCTCCCAAGACTGCAGGCCTGCTCCGATCTGATC
GGCCGACTTATGTACTGCATGCACCTCGAGATCTGAAAGCTTTCTAGACC
AT

BS25002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18128-RA 1020 CG18128-PA 1..1020 17..1036 5070 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18128-RA 1139 CG18128-RA 92..1111 17..1036 5070 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23718826..23719845 1036..17 5070 99.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:41 has no hits.

BS25002.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:19 Download gff for BS25002.complete
Subject Subject Range Query Range Percent Splice Strand
CG18128-RA 92..1110 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:07 Download gff for BS25002.complete
Subject Subject Range Query Range Percent Splice Strand
CG18128-RA 92..1110 17..1035 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:17 Download gff for BS25002.complete
Subject Subject Range Query Range Percent Splice Strand
CG18128-RA 92..1110 17..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:17 Download gff for BS25002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23718827..23719845 17..1035 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:07 Download gff for BS25002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19606350..19607368 17..1035 99   Minus

BS25002.pep Sequence

Translation from 16 to 1035

> BS25002.pep
MCNYDCCKSRSPIAKRMAARKLLQMEEEERRKPKLVIPTPQSLFYPFEEV
EAMAKYIVNVSHIRPKYGLICGSFLSDMVSLVEQPVVIPYEDIPNFPDGI
EPDCSFVLGTVMGAPIIALVHSFHSCDGYNLATCALPVRVMQLCGVRTIM
LTSEAAAVDHGFALGDIMLVQDHINVVGMMHQTPLEGPSDPRFGSRRFSM
VNAYDKDLLEKALEIGKRMGIQKFLHSGVLACMGGPILGTVAEERMLRTM
EVSAVGMSLVPEVIAAHHGGLKVLAFVVISRAASDKESEESDKDKEKDTD
RDSKQDKREQDSQEPVPLPRLQACSDLIGRLMYCMHLEI*

BS25002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18128-PA 339 CG18128-PA 1..339 1..339 1759 100 Plus
CG16758-PF 328 CG16758-PF 1..325 1..337 672 41.6 Plus
CG16758-PG 372 CG16758-PG 45..369 1..337 672 41.6 Plus
CG16758-PE 321 CG16758-PE 1..318 1..337 671 41.6 Plus
CG16758-PH 396 CG16758-PH 45..393 1..337 637 38.9 Plus