BS25003.complete Sequence
614 bp assembled on 2011-06-27
GenBank Submission: KX804461
> BS25003.complete
GAAGTTATCAGTCGACATGATGGAAGGTGAAAGTTCTAAGTCGATCCAAG
GCAACATCGTGGGTCTTAAGAGTACCAACGCCGTGATACTGGCCACCGAC
TCGAAGGAATACGAAATGTATCTAATAGATGACCGCATTTACTGCTGCGC
ACCTCGTTCCGGCATCGATCGGAACATAGTTCTGGAAGTGAGTTCAAAGG
TGGCAAATCTAGTCCGGGATCGCGGCCAGAATGTGACCGTGTCCCAGGTG
CGGGACATGTTTTGCGAAAAGTACCAGACCGCCGAATCCCCAAATGTCAT
GATAGCTGGCCAGGACAGCAGGGGCCTTCACTTATTCAGCATGGAGTGTG
GAAAGTCACGCATGGTGATGTATGGTGCAAAGGGCAGAGATAAGGAGAAC
ATTGTGGACTTTCTCTCGAAAGACTGGAATGATTTCATAAACCTCAGCGA
GGCTGAACAGTTGGCCAGGAAAGCGCTTAGGTGGGAGCACGTGGAAATGT
GCACCATCTATAGGGCTAAAGAAATCGAGGAACAAGGTGCCAACATGGAC
TTCGATATGGACGACGAGACCTCTGTATCGCCGGCCAGCAATTTCTAGAA
GCTTTCTAGACCAT
BS25003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yip3-RB | 582 | CG13549-PB | 1..582 | 17..598 | 2880 | 99.7 | Plus |
| yip3-RA | 582 | CG13549-PA | 1..582 | 17..598 | 2880 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yip3-RB | 788 | CG13549-RB | 106..688 | 17..599 | 2885 | 99.7 | Plus |
| yip3-RA | 1249 | CG13549-RA | 567..1149 | 17..599 | 2885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23244144..23244601 | 599..142 | 2290 | 100 | Minus |
| 2R | 25286936 | 2R | 23244652..23244761 | 141..32 | 520 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:27 has no hits.
BS25003.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:24:20 Download gff for
BS25003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip3-RB | 55..636 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:16 Download gff for
BS25003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip3-RA | 567..1148 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:31 Download gff for
BS25003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip3-RA | 567..1148 | 17..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:31 Download gff for
BS25003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23244145..23244601 | 142..598 | 100 | <- | Minus |
| 2R | 23244652..23244759 | 34..141 | 98 | <- | Minus |
| 2R | 23244817..23244833 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:16 Download gff for
BS25003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19131668..19132124 | 142..598 | 100 | <- | Minus |
| arm_2R | 19132175..19132282 | 34..141 | 98 | <- | Minus |
| arm_2R | 19132340..19132356 | 17..33 | 100 | | Minus |
BS25003.pep Sequence
Translation from 16 to 597
> BS25003.pep
MMEGESSKSIQGNIVGLKSTNAVILATDSKEYEMYLIDDRIYCCAPRSGI
DRNIVLEVSSKVANLVRDRGQNVTVSQVRDMFCEKYQTAESPNVMIAGQD
SRGLHLFSMECGKSRMVMYGAKGRDKENIVDFLSKDWNDFINLSEAEQLA
RKALRWEHVEMCTIYRAKEIEEQGANMDFDMDDETSVSPASNF*
BS25003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yip3-PB | 193 | CG13549-PB | 1..193 | 1..193 | 996 | 100 | Plus |
| yip3-PA | 193 | CG13549-PA | 1..193 | 1..193 | 996 | 100 | Plus |
